Variant report

Variant	rs17011755
Chromosome Location	chr10:50287572-50287573
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50287416..50289075-chr10:50291865..50294530,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10508911	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10857434	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11100985	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11100994	0.91[EUR][1000 genomes]
rs11814277	0.95[CEU][hapmap]
rs11814668	0.91[EUR][1000 genomes]
rs11815070	0.91[EUR][1000 genomes]
rs11816318	0.95[CEU][hapmap]
rs11817325	0.95[CEU][hapmap]
rs12780892	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17011692	0.95[CEU][hapmap];0.88[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17011715	0.95[CEU][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17011726	0.95[CEU][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17011799	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17773666	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28505677	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs36116147	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4264085	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4272720	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs4453139	0.94[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs45563932	0.84[EUR][1000 genomes]
rs55648711	0.91[EUR][1000 genomes]
rs55872223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55936311	0.91[EUR][1000 genomes]
rs56027486	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56157539	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56197478	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59889308	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61166027	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61848370	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61848371	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61848377	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61848380	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61850681	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61850682	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs61850684	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61850689	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61850690	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61850693	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7084861	0.88[EUR][1000 genomes]
rs72785044	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72785050	0.91[EUR][1000 genomes]
rs72785051	0.91[EUR][1000 genomes]
rs72785060	0.92[EUR][1000 genomes]
rs72785072	0.90[EUR][1000 genomes]
rs72785076	0.91[EUR][1000 genomes]
rs72785084	0.89[EUR][1000 genomes]
rs72785087	0.89[EUR][1000 genomes]
rs72786903	0.82[EUR][1000 genomes]
rs72789086	0.81[EUR][1000 genomes]
rs7905715	0.95[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17011755	C10orf128	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50266600-50289400	Weak transcription	Colonic Mucosa	Colon
2	chr10:50267200-50288400	Weak transcription	NHLF	lung
3	chr10:50272600-50294200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:50273600-50289800	Weak transcription	NHDF-Ad	bronchial
5	chr10:50276600-50288200	Weak transcription	Gastric	stomach
6	chr10:50279600-50289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr10:50279800-50288600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr10:50280600-50288200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr10:50280600-50288600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr10:50281600-50288400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:50282400-50289400	Weak transcription	Fetal Kidney	kidney
12	chr10:50283200-50288600	Weak transcription	Placenta	Placenta
13	chr10:50283200-50298200	Weak transcription	Spleen	Spleen
14	chr10:50284000-50288600	Weak transcription	Esophagus	oesophagus
15	chr10:50284200-50288200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:50284600-50288400	Weak transcription	Aorta	Aorta
17	chr10:50284600-50288600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:50284800-50288200	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:50284800-50292400	Enhancers	Liver	Liver
20	chr10:50285200-50287600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr10:50285200-50288200	Weak transcription	Left Ventricle	heart
22	chr10:50285200-50292400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
23	chr10:50285400-50288200	Weak transcription	Brain Angular Gyrus	brain
24	chr10:50285400-50288200	Weak transcription	Fetal Stomach	stomach
25	chr10:50285400-50288200	Weak transcription	Stomach Smooth Muscle	stomach
26	chr10:50285400-50288400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:50285400-50288400	Weak transcription	Pancreas	Pancrea
28	chr10:50285400-50289200	Weak transcription	Duodenum Mucosa	Duodenum
29	chr10:50285400-50289600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr10:50285600-50288200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr10:50285600-50288200	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:50285600-50288200	Weak transcription	Fetal Thymus	thymus
33	chr10:50285600-50288200	Weak transcription	Right Atrium	heart
34	chr10:50285600-50288400	Weak transcription	Brain Anterior Caudate	brain
35	chr10:50285600-50288400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr10:50285600-50288400	Weak transcription	Brain Hippocampus Middle	brain
37	chr10:50285600-50288600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:50286000-50292400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:50286400-50288200	Weak transcription	Right Ventricle	heart
40	chr10:50286800-50289600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:50287000-50290200	Enhancers	Fetal Intestine Small	intestine
42	chr10:50287200-50287800	Enhancers	Fetal Lung	lung
43	chr10:50287200-50289400	Enhancers	Primary hematopoietic stem cells	blood
44	chr10:50287200-50290000	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr10:50287200-50290400	Enhancers	K562	blood
46	chr10:50287200-50292200	Enhancers	Adipose Nuclei	Adipose
47	chr10:50287200-50292400	Enhancers	Brain Substantia Nigra	brain
48	chr10:50287400-50287600	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr10:50287400-50288400	Weak transcription	Ovary	ovary
50	chr10:50287400-50288400	Weak transcription	HSMMtube	muscle

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