Variant report

Variant	rs17774058
Chromosome Location	chr10:50405933-50405934
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50404502..50406713-chr10:50505613..50507212,2	K562	blood:

Variant related genes	Relation type
ENSG00000236208	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10776545	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10857440	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11100994	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11814277	1.00[CHD][hapmap]
rs11814668	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs11815070	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12249313	0.82[AMR][1000 genomes]
rs12249370	0.82[AMR][1000 genomes]
rs17011692	1.00[CHD][hapmap]
rs17011799	1.00[CHD][hapmap]
rs17774010	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17774028	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs45563932	0.83[AMR][1000 genomes]
rs55648711	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs55936311	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56081724	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7073558	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7073561	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72785060	1.00[AFR][1000 genomes]
rs72785072	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72785076	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72785084	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72785087	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs72786903	0.81[AMR][1000 genomes]
rs72789086	0.84[AMR][1000 genomes]
rs72789089	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72789095	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72789097	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7900761	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7905715	1.00[CHD][hapmap];1.00[GIH][hapmap];0.84[AMR][1000 genomes]
rs7919424	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17774058	DKK1	cis	parietal	SCAN
rs17774058	C10orf128	cis	Whole Blood	GTEx
rs17774058	C10orf128	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50403600-50408600	Weak transcription	HUVEC	blood vessel
2	chr10:50405800-50409000	Weak transcription	K562	blood

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