Variant report

Variant	rs72789089
Chromosome Location	chr10:50382273-50382274
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:50376651..50379142-chr10:50381763..50383649,2	MCF-7	breast:
2	chr10:50381550..50383813-chr10:50395323..50397024,2	MCF-7	breast:
3	chr10:50381674..50383978-chr10:50507199..50508733,2	K562	blood:
4	chr10:50380358..50383451-chr10:50384690..50387473,3	MCF-7	breast:
5	chr10:50379304..50381161-chr10:50382104..50383879,2	MCF-7	breast:
6	chr10:50362714..50364544-chr10:50380646..50383055,2	K562	blood:
7	chr10:50338354..50340980-chr10:50380795..50383711,2	K562	blood:

Variant related genes	Relation type
ENSG00000204161	Chromatin interaction
ENSG00000177354	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10776545	0.84[AMR][1000 genomes]
rs10857440	0.84[AMR][1000 genomes]
rs11100994	0.88[AMR][1000 genomes]
rs11814668	0.88[AMR][1000 genomes]
rs11815070	0.88[AMR][1000 genomes]
rs17774010	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17774028	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17774058	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs45563932	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs55648711	0.84[AMR][1000 genomes]
rs55936311	0.88[AMR][1000 genomes]
rs56081724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7073558	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7073561	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72785060	0.81[AMR][1000 genomes]
rs72785072	0.84[AMR][1000 genomes]
rs72785076	0.84[AMR][1000 genomes]
rs72785084	0.88[AMR][1000 genomes]
rs72785087	0.88[AMR][1000 genomes]
rs72786903	0.88[AMR][1000 genomes]
rs72789086	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72789095	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72789097	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7900761	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7905715	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7919424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895375	chr10:50306386-51028871	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv534410	chr10:50317458-50826916	Weak transcription Bivalent Enhancer Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50367600-50384600	Weak transcription	Dnd41	blood
2	chr10:50372000-50384000	Weak transcription	Colonic Mucosa	Colon
3	chr10:50372800-50386200	Weak transcription	Pancreas	Pancrea
4	chr10:50373200-50385200	Weak transcription	Colon Smooth Muscle	Colon
5	chr10:50373600-50383000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:50375000-50384000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:50375400-50382600	Weak transcription	Lung	lung
8	chr10:50376800-50395200	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:50377800-50384000	Weak transcription	NHDF-Ad	bronchial
10	chr10:50378000-50386000	Enhancers	Fetal Muscle Leg	muscle
11	chr10:50378000-50388600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
12	chr10:50378600-50384800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:50379600-50383800	Enhancers	Primary B cells from cord blood	blood
14	chr10:50379800-50382400	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr10:50380200-50385200	Weak transcription	HSMMtube	muscle
16	chr10:50380400-50386600	Enhancers	Right Ventricle	heart
17	chr10:50380600-50386400	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:50381000-50384000	Weak transcription	Spleen	Spleen
19	chr10:50381000-50384200	Weak transcription	Fetal Thymus	thymus
20	chr10:50381000-50385000	Weak transcription	Brain Hippocampus Middle	brain
21	chr10:50381200-50384800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:50381400-50383400	Enhancers	Adipose Nuclei	Adipose
23	chr10:50381400-50384400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:50381400-50385000	Weak transcription	Brain Cingulate Gyrus	brain
25	chr10:50381600-50382800	Weak transcription	Right Atrium	heart
26	chr10:50381600-50383800	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr10:50381600-50384200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:50381600-50385000	Weak transcription	Esophagus	oesophagus
29	chr10:50381800-50382800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:50381800-50382800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr10:50381800-50382800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr10:50381800-50382800	Enhancers	Monocytes-CD14+_RO01746	blood
33	chr10:50381800-50384200	Weak transcription	Brain Substantia Nigra	brain
34	chr10:50381800-50394800	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr10:50382000-50383000	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr10:50382000-50383000	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr10:50382000-50383400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr10:50382000-50384200	Weak transcription	Duodenum Mucosa	Duodenum
39	chr10:50382200-50382800	Enhancers	GM12878-XiMat	blood
40	chr10:50382200-50383200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr10:50382200-50386600	Enhancers	Left Ventricle	heart
42	chr10:50382200-50390000	Enhancers	K562	blood

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