Variant report

Variant	rs61849569
Chromosome Location	chr10:28661816-28661817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10733991	1.00[AFR][1000 genomes]
rs2085470	1.00[AFR][1000 genomes]
rs2100614	1.00[AFR][1000 genomes]
rs61845766	1.00[AFR][1000 genomes]
rs61845912	1.00[AFR][1000 genomes]
rs61845913	1.00[AFR][1000 genomes]
rs61845918	1.00[AFR][1000 genomes]
rs61845941	1.00[AFR][1000 genomes]
rs61845946	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv1839810	chr10:28656826-28665006	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv550286	chr10:28658275-28664652	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv550287	chr10:28658275-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv550288	chr10:28658275-28665041	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550289	chr10:28659502-28664743	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv550290	chr10:28660603-28664569	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv550291	chr10:28660603-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv550292	chr10:28660603-28665041	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28644400-28665000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28657200-28662600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr10:28659400-28664400	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:28659600-28667800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr10:28659800-28663200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:28659800-28667800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr10:28660000-28668200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr10:28660200-28663800	Weak transcription	HepG2	liver
9	chr10:28660400-28664400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr10:28660400-28664400	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr10:28660400-28667600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr10:28661400-28662200	Enhancers	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
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