Variant report

Variant	rs61849572
Chromosome Location	chr10:28664537-28664538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28663936..28666501-chr10:28668438..28671380,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11593157	0.82[EUR][1000 genomes]
rs12763338	0.98[EUR][1000 genomes]
rs12763777	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34085854	1.00[EUR][1000 genomes]
rs35315735	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61849570	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:83 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1041555	chr10:28419399-29304934	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1037863	chr10:28419399-29378871	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv540521	chr10:28419399-29378871	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv1839810	chr10:28656826-28665006	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv550286	chr10:28658275-28664652	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv550287	chr10:28658275-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv550288	chr10:28658275-28665041	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv550289	chr10:28659502-28664743	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv550290	chr10:28660603-28664569	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv550291	chr10:28660603-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv550292	chr10:28660603-28665041	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3314352	chr10:28662046-28666844	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3337700	chr10:28663096-28666094	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
15	nsv820584	chr10:28663311-28665144	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv825321	chr10:28663311-28665674	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	esv3314330	chr10:28663394-28665555	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv10367	chr10:28663482-28665664	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv550294	chr10:28663605-28664569	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
20	nsv550295	chr10:28663605-28664652	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
21	esv1848081	chr10:28663605-28664743	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
22	nsv550296	chr10:28663605-28664743	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
23	esv1835475	chr10:28663605-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
24	esv1836890	chr10:28663605-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
25	esv1837795	chr10:28663605-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	esv1839759	chr10:28663605-28664798	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
27	esv1841663	chr10:28663605-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
28	esv1841682	chr10:28663605-28664798	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
29	esv1848416	chr10:28663605-28664798	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
30	nsv550297	chr10:28663605-28664798	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
31	esv1842782	chr10:28663605-28664848	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
32	esv1845670	chr10:28663605-28664848	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
33	esv1846586	chr10:28663605-28664848	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
34	esv1850054	chr10:28663605-28664848	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
35	esv1848935	chr10:28663605-28664955	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
36	esv1836431	chr10:28663605-28665006	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
37	esv1840821	chr10:28663605-28665006	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
38	esv1841427	chr10:28663605-28665006	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
39	esv1842357	chr10:28663605-28665006	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
40	esv1844409	chr10:28663605-28665006	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
41	esv1846235	chr10:28663605-28665006	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
42	esv1849040	chr10:28663605-28665006	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
43	esv1850173	chr10:28663605-28665006	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
44	esv1850329	chr10:28663605-28665006	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
45	esv1850970	chr10:28663605-28665006	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
46	nsv550298	chr10:28663605-28665006	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
47	esv1835105	chr10:28663605-28665041	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
48	esv1840769	chr10:28663605-28665041	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
49	esv1843212	chr10:28663605-28665041	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
50	esv1850624	chr10:28663605-28665041	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28644400-28665000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28659600-28667800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr10:28659800-28667800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr10:28660000-28668200	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr10:28660400-28667600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:28663800-28665400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:28663800-28665400	Enhancers	HMEC	breast
8	chr10:28663800-28666000	Enhancers	HepG2	liver
9	chr10:28664000-28664800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr10:28664000-28665000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:28664000-28665000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:28664000-28665000	Weak transcription	Placenta	Placenta
13	chr10:28664000-28665200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:28664200-28665000	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:28664200-28665000	Enhancers	HSMMtube	muscle
16	chr10:28664200-28665200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:28664200-28665200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:28664200-28665200	Weak transcription	Pancreas	Pancrea
19	chr10:28664200-28665200	Enhancers	NHEK	skin
20	chr10:28664400-28664800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:28664400-28664800	Enhancers	HSMM	muscle
22	chr10:28664400-28665000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:28664400-28665000	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr10:28664400-28665000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr10:28664400-28665000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr10:28664400-28665000	Enhancers	Duodenum Mucosa	Duodenum
27	chr10:28664400-28665000	Enhancers	Rectal Mucosa Donor 31	rectum
28	chr10:28664400-28665200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr10:28664400-28665200	Enhancers	Fetal Heart	heart
30	chr10:28664400-28665200	Enhancers	A549	lung
31	chr10:28664400-28665400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr10:28664400-28665800	Enhancers	Aorta	Aorta
33	chr10:28664400-28666200	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr10:28664400-28666800	Enhancers	Primary monocytes fromperipheralblood	blood

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