Variant report

Variant	rs61849685
Chromosome Location	chr1:211852301-211852302
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10494938	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10494940	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17651870	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2083903	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35573429	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41275370	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41314254	0.83[ASN][1000 genomes]
rs61828229	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61828230	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849678	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61849681	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61849682	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61849684	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6697046	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6704128	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754845	chr1:211846605-211878605	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211849400-211854000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:211849400-211854000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr1:211849400-211854000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
4	chr1:211849400-211854000	Weak transcription	Brain Angular Gyrus	brain
5	chr1:211849400-211854400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:211849400-211854400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr1:211849600-211853400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr1:211849600-211853800	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr1:211849600-211854000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr1:211849600-211854000	Weak transcription	Primary T helper cells PMA-I stimulated	--
11	chr1:211849600-211854000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr1:211849600-211854000	Weak transcription	Brain Anterior Caudate	brain
13	chr1:211849600-211854000	Weak transcription	Brain Cingulate Gyrus	brain
14	chr1:211849600-211854000	Weak transcription	Brain Hippocampus Middle	brain
15	chr1:211849600-211854000	Weak transcription	NH-A	brain
16	chr1:211849600-211854400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:211849600-211854400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr1:211849600-211854400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr1:211849600-211854400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr1:211849600-211854400	Weak transcription	Fetal Lung	lung
21	chr1:211849600-211854400	Weak transcription	HMEC	breast
22	chr1:211849800-211854000	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr1:211849800-211854000	Weak transcription	Dnd41	blood
24	chr1:211849800-211854200	Weak transcription	NHEK	skin
25	chr1:211849800-211854400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr1:211850000-211853800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:211850000-211854000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr1:211850000-211854000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr1:211850000-211854000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr1:211850000-211854200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:211850000-211854400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr1:211850000-211854400	Weak transcription	Hela-S3	cervix
33	chr1:211850000-211856600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr1:211850000-211857200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr1:211850000-211857400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr1:211850200-211854000	Weak transcription	A549	lung
37	chr1:211851800-211853800	Weak transcription	HepG2	liver
38	chr1:211852000-211854000	Weak transcription	Primary B cells from peripheral blood	blood
39	chr1:211852200-211852600	Weak transcription	GM12878-XiMat	blood
40	chr1:211852200-211854400	Weak transcription	Primary B cells from cord blood	blood

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