Variant report

Variant	rs17651870
Chromosome Location	chr1:211839689-211839690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:211837374..211840325-chr1:211844440..211846653,2	K562	blood:
2	chr1:211830163..211831945-chr1:211837161..211840904,3	K562	blood:
3	chr1:211837759..211840132-chr1:211841925..211843873,2	K562	blood:

Variant related genes	Relation type
ENSG00000117650	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10157989	1.00[JPT][hapmap]
rs10158740	1.00[JPT][hapmap]
rs10494938	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10494940	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11580557	1.00[JPT][hapmap]
rs12239534	1.00[JPT][hapmap]
rs12711507	1.00[JPT][hapmap]
rs2083903	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35573429	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41275370	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4951414	1.00[JPT][hapmap]
rs4951417	1.00[JPT][hapmap]
rs4951420	1.00[JPT][hapmap]
rs603227	1.00[JPT][hapmap]
rs61828229	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61828230	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61849678	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61849681	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61849682	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61849684	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61849685	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6697046	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6703304	1.00[YRI][hapmap]
rs6704128	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211827600-211847600	Weak transcription	HSMM	muscle
2	chr1:211827600-211847600	Weak transcription	NHEK	skin
3	chr1:211828200-211840400	Weak transcription	Fetal Lung	lung
4	chr1:211828600-211840200	Weak transcription	HMEC	breast
5	chr1:211828600-211842400	Weak transcription	NHLF	lung
6	chr1:211828600-211842800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:211828600-211845600	Weak transcription	Fetal Heart	heart
8	chr1:211828600-211847600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:211828600-211847600	Weak transcription	Brain Germinal Matrix	brain
10	chr1:211828600-211847800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:211828600-211847800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr1:211828600-211848000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr1:211828600-211848000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr1:211828800-211840000	Weak transcription	HUVEC	blood vessel
15	chr1:211828800-211841800	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:211828800-211847600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:211829000-211842800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:211829000-211847400	Weak transcription	Duodenum Mucosa	Duodenum
19	chr1:211829000-211847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr1:211829200-211840800	Weak transcription	Fetal Intestine Large	intestine
21	chr1:211829600-211848600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:211831400-211842400	Weak transcription	Fetal Stomach	stomach
23	chr1:211832400-211847600	Weak transcription	Primary B cells from cord blood	blood
24	chr1:211833200-211847800	Weak transcription	Fetal Intestine Small	intestine
25	chr1:211833600-211845800	Strong transcription	Primary monocytes fromperipheralblood	blood
26	chr1:211833800-211847000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr1:211835200-211846400	Strong transcription	Fetal Thymus	thymus
28	chr1:211835400-211844800	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr1:211835400-211845200	Strong transcription	Dnd41	blood
30	chr1:211835400-211847400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr1:211835800-211844600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr1:211835800-211844800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:211836000-211844600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:211836400-211845000	Strong transcription	A549	lung
35	chr1:211836600-211840000	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr1:211836600-211844800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr1:211836600-211846800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr1:211836800-211839800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr1:211837000-211839800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr1:211837000-211842400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:211837200-211842200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr1:211837200-211848000	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr1:211837400-211844400	Strong transcription	Hela-S3	cervix
44	chr1:211837400-211848000	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr1:211837600-211839800	Genic enhancers	HepG2	liver
46	chr1:211837600-211840000	Strong transcription	Thymus	Thymus
47	chr1:211837600-211845200	Strong transcription	HUES48 Cell Line	embryonic stem cell
48	chr1:211837600-211846800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr1:211837600-211847000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr1:211837600-211847600	Weak transcription	Fetal Kidney	kidney

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