Variant report

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:211802788..211806999-chr1:211814684..211819078,4	K562	blood:
2	chr1:211782443..211790536-chr1:211800686..211806134,8	K562	blood:
3	chr1:211793145..211800078-chr1:211800841..211805263,11	K562	blood:
4	chr1:211741510..211743942-chr1:211802313..211805190,2	K562	blood:
5	chr1:211751888..211754442-chr1:211802354..211807016,4	K562	blood:
6	chr1:211723836..211726328-chr1:211802302..211805262,2	K562	blood:
7	chr1:211751862..211753388-chr1:211800934..211803854,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000228792	Chromatin interaction
ENSG00000170385	Chromatin interaction

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10157989	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10158618	0.85[ASN][1000 genomes]
rs10158723	0.85[ASN][1000 genomes]
rs10158740	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10494940	1.00[JPT][hapmap]
rs11577181	0.85[ASN][1000 genomes]
rs11580557	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11590554	0.85[ASN][1000 genomes]
rs12239534	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12711504	0.85[ASN][1000 genomes]
rs12711505	0.85[ASN][1000 genomes]
rs12711506	0.85[ASN][1000 genomes]
rs12711507	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs12730869	0.85[ASN][1000 genomes]
rs12749444	0.81[ASN][1000 genomes]
rs12751564	0.85[ASN][1000 genomes]
rs12755496	0.85[ASN][1000 genomes]
rs12756676	0.85[ASN][1000 genomes]
rs17017855	0.85[ASN][1000 genomes]
rs17651870	1.00[JPT][hapmap]
rs34028707	0.80[ASN][1000 genomes]
rs4345851	0.85[ASN][1000 genomes]
rs4399227	0.85[ASN][1000 genomes]
rs4562684	0.85[ASN][1000 genomes]
rs4951417	1.00[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4951420	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs603227	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6540690	1.00[CHB][hapmap]
rs6540692	0.85[ASN][1000 genomes]
rs7529914	0.85[ASN][1000 genomes]
rs765202	0.95[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211790400-211803600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:211793400-211803000	Weak transcription	Fetal Intestine Small	intestine
3	chr1:211795200-211803400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:211796600-211803600	Weak transcription	Spleen	Spleen
5	chr1:211798600-211803800	Weak transcription	Hela-S3	cervix
6	chr1:211800000-211807200	Enhancers	Fetal Heart	heart
7	chr1:211800800-211803600	Weak transcription	Left Ventricle	heart
8	chr1:211802000-211803400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:211802000-211803400	Enhancers	K562	blood
10	chr1:211802000-211803600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:211802000-211806400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:211802400-211803400	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:211802600-211803400	Weak transcription	Right Atrium	heart
14	chr1:211802600-211803600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:211802600-211803600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:211802600-211803600	Weak transcription	Fetal Muscle Leg	muscle
17	chr1:211802800-211804200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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