The 2.0 version of rSNPBase

Variant report

Variant rs4399227
Chromosome Location chr1:211793554-211793555
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:23 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211785600-211794800 Weak transcription Brain Anterior Caudate brain
2 chr1:211787000-211796800 Weak transcription Gastric stomach
3 chr1:211788200-211794600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
4 chr1:211790200-211794800 Weak transcription Muscle Satellite Cultured Cells --
5 chr1:211790200-211794800 Weak transcription Duodenum Smooth Muscle Duodenum
6 chr1:211790400-211794400 Weak transcription Esophagus oesophagus
7 chr1:211790400-211794600 Weak transcription Right Atrium heart
8 chr1:211790400-211794800 Weak transcription Right Ventricle heart
9 chr1:211790400-211795200 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr1:211790400-211796600 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr1:211790400-211798400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
12 chr1:211790400-211803600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr1:211790600-211794800 Weak transcription Fetal Muscle Leg muscle
14 chr1:211790600-211795000 Weak transcription Adipose Nuclei Adipose
15 chr1:211791400-211794800 Weak transcription Left Ventricle heart
16 chr1:211792200-211793800 Enhancers K562 blood
17 chr1:211792600-211794200 Enhancers Primary hematopoietic stem cells short term culture blood
18 chr1:211793000-211794600 Weak transcription Liver Liver
19 chr1:211793400-211794000 Enhancers Spleen Spleen
20 chr1:211793400-211795200 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
21 chr1:211793400-211795400 Enhancers HepG2 liver
22 chr1:211793400-211796800 Weak transcription Fetal Intestine Large intestine
23 chr1:211793400-211803000 Weak transcription Fetal Intestine Small intestine

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Last update: Aug 31, 2015