The 2.0 version of rSNPBase

Variant report

Variant rs6540692
Chromosome Location chr1:211784841-211784842
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:74 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:211771600-211786200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
2 chr1:211777000-211786600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
3 chr1:211777200-211786200 Weak transcription NHLF lung
4 chr1:211780800-211786400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr1:211781000-211785400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
6 chr1:211781000-211786400 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:211781200-211785000 Enhancers Liver Liver
8 chr1:211781200-211785200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
9 chr1:211781200-211786200 Enhancers K562 blood
10 chr1:211781400-211786400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
11 chr1:211781600-211787000 Weak transcription Primary hematopoietic stem cells blood
12 chr1:211781800-211786400 Weak transcription Stomach Mucosa stomach
13 chr1:211781800-211792000 Weak transcription Primary B cells from cord blood blood
14 chr1:211782000-211785200 Weak transcription Primary neutrophils fromperipheralblood blood
15 chr1:211782000-211786600 Weak transcription Rectal Mucosa Donor 31 rectum
16 chr1:211782000-211786600 Weak transcription Sigmoid Colon Sigmoid Colon
17 chr1:211782200-211787400 Weak transcription Small Intestine intestine
18 chr1:211782600-211786200 Weak transcription Fetal Intestine Large intestine
19 chr1:211782600-211786200 Enhancers Hela-S3 cervix
20 chr1:211782600-211786200 Enhancers Monocytes-CD14+_RO01746 blood
21 chr1:211782800-211785400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:211782800-211785400 Flanking Active TSS HepG2 liver
23 chr1:211782800-211785600 Enhancers Fetal Muscle Trunk muscle
24 chr1:211782800-211787400 Weak transcription Rectal Mucosa Donor 29 rectum
25 chr1:211783000-211786200 Weak transcription Fetal Intestine Small intestine
26 chr1:211783000-211786400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
27 chr1:211783800-211786600 Weak transcription Gastric stomach
28 chr1:211784000-211785600 Enhancers Adipose Nuclei Adipose
29 chr1:211784000-211787000 Enhancers Colon Smooth Muscle Colon
30 chr1:211784000-211787800 Enhancers Fetal Muscle Leg muscle
31 chr1:211784000-211788400 Enhancers Primary monocytes fromperipheralblood blood
32 chr1:211784200-211785000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:211784200-211785000 Enhancers Skeletal Muscle Male skeletal muscle
34 chr1:211784200-211785000 Enhancers NHDF-Ad bronchial
35 chr1:211784200-211785200 Enhancers Brain Angular Gyrus brain
36 chr1:211784200-211785200 Enhancers Fetal Lung lung
37 chr1:211784200-211785400 Enhancers Brain Hippocampus Middle brain
38 chr1:211784200-211785400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
39 chr1:211784200-211785600 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr1:211784200-211785600 Enhancers Brain Anterior Caudate brain
41 chr1:211784200-211785600 Enhancers Brain Cingulate Gyrus brain
42 chr1:211784200-211785600 Enhancers Fetal Thymus thymus
43 chr1:211784200-211787000 Enhancers Spleen Spleen
44 chr1:211784200-211789200 Enhancers Primary hematopoietic stem cells short term culture blood
45 chr1:211784400-211785000 Enhancers Fetal Brain Male brain
46 chr1:211784400-211785200 Enhancers Cortex derived primary cultured neurospheres brain
47 chr1:211784400-211785200 Enhancers Brain Inferior Temporal Lobe brain
48 chr1:211784400-211785200 Enhancers Brain Substantia Nigra brain
49 chr1:211784400-211785200 Enhancers Skeletal Muscle Female skeletal muscle
50 chr1:211784400-211785600 Enhancers Left Ventricle heart

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Last update: Aug 31, 2015