Variant report

Variant	rs61855353
Chromosome Location	chr10:89970481-89970482
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89964521..89966509-chr10:89967760..89970508,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61855303	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
2	chr10:89966400-89973000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr10:89967800-89978200	Weak transcription	Pancreas	Pancrea
4	chr10:89968000-89972400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:89968800-89974800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:89969000-89970600	Enhancers	Hela-S3	cervix
7	chr10:89969000-89970800	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr10:89969000-89971200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr10:89969000-89972600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:89969200-89979400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr10:89969400-89970800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:89969600-89970800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:89969600-89970800	Enhancers	Adipose Nuclei	Adipose
14	chr10:89969600-89970800	Enhancers	NHDF-Ad	bronchial
15	chr10:89969600-89974000	Weak transcription	GM12878-XiMat	blood
16	chr10:89969600-89974400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:89969800-89970600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr10:89969800-89970800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:89970000-89970600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr10:89970000-89971000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr10:89970200-89970600	Enhancers	Right Atrium	heart
22	chr10:89970200-89970800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:89970400-89970600	Enhancers	Fetal Lung	lung
24	chr10:89970400-89970600	Enhancers	Psoas Muscle	Psoas

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