Variant report

Variant	rs61855303
Chromosome Location	chr10:89956335-89956336
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89954251..89956683-chr10:89959327..89961905,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17420329	1.00[ASN][1000 genomes]
rs59218105	1.00[ASN][1000 genomes]
rs61855353	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89950400-89956400	Enhancers	Fetal Thymus	thymus
2	chr10:89951000-89965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr10:89951800-89956600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:89952400-89956400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr10:89954200-89956800	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr10:89954200-89957600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr10:89954400-89957800	Weak transcription	NHEK	skin
8	chr10:89954800-89956600	Enhancers	Fetal Stomach	stomach
9	chr10:89954800-89957600	Weak transcription	HMEC	breast
10	chr10:89955000-89956400	Enhancers	Fetal Lung	lung
11	chr10:89955200-89956400	Enhancers	Liver	Liver
12	chr10:89955200-89960000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:89955400-89959200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:89955400-89960400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr10:89955400-89962400	Weak transcription	Left Ventricle	heart
16	chr10:89955400-89963800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr10:89955400-89965000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
19	chr10:89956200-89956400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:89956200-89956400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:89956200-89956400	Enhancers	Primary B cells from peripheral blood	blood
22	chr10:89956200-89956400	Enhancers	Right Atrium	heart
23	chr10:89956200-89956600	Enhancers	Fetal Muscle Leg	muscle
24	chr10:89956200-89959600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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