Variant report

Variant	rs61857747
Chromosome Location	chr10:92697654-92697655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92696774..92699626-chr10:92704763..92707739,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17535328	0.82[EUR][1000 genomes]
rs55971695	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56294861	0.81[EUR][1000 genomes]
rs61857750	0.81[EUR][1000 genomes]
rs61857751	0.81[EUR][1000 genomes]
rs61857752	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7895858	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92688400-92699800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:92692600-92698600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:92694800-92698000	Enhancers	HSMM	muscle
4	chr10:92695200-92698600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:92695600-92698000	Weak transcription	Brain Germinal Matrix	brain
6	chr10:92695600-92698400	Enhancers	Fetal Heart	heart
7	chr10:92695600-92698800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:92695600-92699600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:92695600-92704600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:92695600-92705200	Enhancers	Dnd41	blood
11	chr10:92695800-92698000	Weak transcription	Aorta	Aorta
12	chr10:92696200-92700200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:92696400-92704600	Weak transcription	Thymus	Thymus
14	chr10:92696600-92698400	Enhancers	HepG2	liver
15	chr10:92697000-92698200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:92697000-92698200	Enhancers	HUVEC	blood vessel
17	chr10:92697200-92697800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr10:92697200-92698000	Enhancers	NH-A	brain
19	chr10:92697200-92698200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr10:92697200-92698200	Enhancers	Fetal Muscle Trunk	muscle
21	chr10:92697400-92697800	Enhancers	Osteobl	bone
22	chr10:92697400-92698000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr10:92697400-92698000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr10:92697400-92699400	Weak transcription	Fetal Thymus	thymus
25	chr10:92697600-92697800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:92697600-92698000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr10:92697600-92698000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:92697600-92698000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
29	chr10:92697600-92698000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:92697600-92699200	Weak transcription	Fetal Muscle Leg	muscle

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