Variant report

Variant	rs56294861
Chromosome Location	chr10:92698832-92698833
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17456916	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17535328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55971695	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56075405	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56226914	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61857747	0.81[EUR][1000 genomes]
rs61857750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61857751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61857752	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61859572	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61859574	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61859575	0.83[EUR][1000 genomes]
rs61859576	0.86[EUR][1000 genomes]
rs61859580	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61859603	1.00[AFR][1000 genomes]
rs61859604	1.00[AFR][1000 genomes]
rs61859605	1.00[AFR][1000 genomes]
rs61859606	1.00[AFR][1000 genomes]
rs7895858	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92688400-92699800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr10:92695600-92699600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:92695600-92704600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:92695600-92705200	Enhancers	Dnd41	blood
5	chr10:92696200-92700200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:92696400-92704600	Weak transcription	Thymus	Thymus
7	chr10:92697400-92699400	Weak transcription	Fetal Thymus	thymus
8	chr10:92697600-92699200	Weak transcription	Fetal Muscle Leg	muscle
9	chr10:92697800-92705000	Weak transcription	Osteobl	bone
10	chr10:92698000-92702600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr10:92698000-92704400	Weak transcription	HSMM	muscle
12	chr10:92698200-92699000	Weak transcription	HUVEC	blood vessel
13	chr10:92698200-92699200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr10:92698200-92699600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr10:92698200-92705400	Weak transcription	Aorta	Aorta
16	chr10:92698800-92699400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr10:92698800-92699600	Enhancers	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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