Variant report

Variant	rs17456916
Chromosome Location	chr10:92701562-92701563
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92699780..92702462-chr10:92702813..92705151,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17535328	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17535998	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17536094	0.82[CEU][hapmap]
rs55863711	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56075405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56226914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56294861	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61857750	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61857751	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61857752	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61859572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61859573	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61859574	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61859575	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61859576	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61859580	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859600	0.82[AMR][1000 genomes]
rs61859601	0.82[AMR][1000 genomes]
rs61859602	0.82[AMR][1000 genomes]
rs61859603	1.00[AFR][1000 genomes]
rs61859604	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61859605	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61859606	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61859607	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61859608	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61859609	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61859610	0.83[EUR][1000 genomes]
rs61859618	0.85[AMR][1000 genomes]
rs7083785	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs7083909	0.84[EUR][1000 genomes]
rs7912022	0.80[EUR][1000 genomes]
rs7914213	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92695600-92704600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:92695600-92705200	Enhancers	Dnd41	blood
3	chr10:92696400-92704600	Weak transcription	Thymus	Thymus
4	chr10:92697800-92705000	Weak transcription	Osteobl	bone
5	chr10:92698000-92702600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:92698000-92704400	Weak transcription	HSMM	muscle
7	chr10:92698200-92705400	Weak transcription	Aorta	Aorta
8	chr10:92699400-92703000	Enhancers	Fetal Thymus	thymus
9	chr10:92699800-92704200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:92700000-92707000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:92701400-92704600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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