Variant report

Variant	rs61859608
Chromosome Location	chr10:92746968-92746969
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11597992	0.81[ASN][1000 genomes]
rs17103779	0.85[ASN][1000 genomes]
rs17456916	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17535998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17536094	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs17536636	1.00[AFR][1000 genomes]
rs55863711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55886424	0.97[ASN][1000 genomes]
rs56075405	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56226914	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs56242242	0.97[ASN][1000 genomes]
rs56285679	0.97[ASN][1000 genomes]
rs56342917	0.97[ASN][1000 genomes]
rs56374954	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56954792	0.97[ASN][1000 genomes]
rs61857869	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61857871	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61859572	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61859573	0.81[AMR][1000 genomes]
rs61859574	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61859575	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61859576	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61859580	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61859600	0.81[ASN][1000 genomes]
rs61859601	0.81[ASN][1000 genomes]
rs61859602	0.81[ASN][1000 genomes]
rs61859604	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61859605	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859606	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61859607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859610	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859611	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859612	0.97[ASN][1000 genomes]
rs61859613	0.97[ASN][1000 genomes]
rs61859614	0.97[ASN][1000 genomes]
rs61859616	0.97[ASN][1000 genomes]
rs61859617	0.97[ASN][1000 genomes]
rs61859618	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7083785	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083909	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906136	0.88[ASN][1000 genomes]
rs7912022	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914213	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92742800-92747200	Enhancers	Left Ventricle	heart
2	chr10:92742800-92750000	Enhancers	Fetal Thymus	thymus
3	chr10:92744200-92752000	Weak transcription	GM12878-XiMat	blood
4	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
5	chr10:92744400-92749800	Enhancers	Thymus	Thymus
6	chr10:92745000-92748000	Genic enhancers	Dnd41	blood
7	chr10:92745800-92749600	Enhancers	Fetal Heart	heart
8	chr10:92746200-92747400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:92746600-92753600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr10:92746800-92747800	Weak transcription	Right Atrium	heart
11	chr10:92746800-92748600	Weak transcription	Psoas Muscle	Psoas
12	chr10:92746800-92748600	Weak transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links