Variant report

Variant	rs61859602
Chromosome Location	chr10:92726081-92726082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11597992	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598058	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17456916	0.82[AMR][1000 genomes]
rs35874668	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55863711	0.81[ASN][1000 genomes]
rs56075405	0.82[AMR][1000 genomes]
rs56226914	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs61859572	0.82[AMR][1000 genomes]
rs61859573	0.87[ASN][1000 genomes]
rs61859574	0.90[ASN][1000 genomes]
rs61859575	0.90[ASN][1000 genomes]
rs61859576	0.90[ASN][1000 genomes]
rs61859580	0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs61859600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859604	0.87[ASN][1000 genomes]
rs61859605	0.84[ASN][1000 genomes]
rs61859607	0.81[ASN][1000 genomes]
rs61859608	0.81[ASN][1000 genomes]
rs61859609	0.81[ASN][1000 genomes]
rs7083785	0.81[ASN][1000 genomes]
rs7914213	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92715200-92737000	Weak transcription	Thymus	Thymus
2	chr10:92720600-92728200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr10:92721200-92731600	Weak transcription	Aorta	Aorta
4	chr10:92721600-92728200	Weak transcription	A549	lung
5	chr10:92722600-92730600	Genic enhancers	Dnd41	blood
6	chr10:92723400-92727800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:92724000-92726400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:92724000-92726800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:92724200-92726200	Enhancers	NHDF-Ad	bronchial
10	chr10:92724200-92726200	Enhancers	Osteobl	bone
11	chr10:92724200-92727200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr10:92724400-92726400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:92724600-92727600	Weak transcription	Fetal Kidney	kidney
14	chr10:92724600-92728800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr10:92724800-92727200	Weak transcription	Psoas Muscle	Psoas
16	chr10:92725000-92726200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:92725000-92728800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr10:92725200-92726200	Enhancers	Fetal Heart	heart
19	chr10:92725200-92727400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr10:92725600-92728800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:92725800-92726400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:92725800-92726600	Weak transcription	Fetal Thymus	thymus
23	chr10:92725800-92726800	Active TSS	Right Ventricle	heart
24	chr10:92725800-92727400	Weak transcription	HSMM	muscle
25	chr10:92725800-92727800	Weak transcription	HSMMtube	muscle
26	chr10:92725800-92728000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr10:92725800-92729000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr10:92725800-92729400	Active TSS	Left Ventricle	heart
29	chr10:92725800-92731800	Active TSS	Right Atrium	heart
30	chr10:92726000-92728000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr10:92726000-92728400	Weak transcription	NHLF	lung

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