Variant report

Variant	rs7914213
Chromosome Location	chr10:92748026-92748027
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11597992	0.81[ASN][1000 genomes]
rs17103779	0.85[ASN][1000 genomes]
rs17456916	0.84[EUR][1000 genomes]
rs17535998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17536094	0.80[CEU][hapmap];0.84[EUR][1000 genomes]
rs55863711	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55886424	0.97[ASN][1000 genomes]
rs56075405	0.87[EUR][1000 genomes]
rs56226914	0.87[EUR][1000 genomes]
rs56242242	0.97[ASN][1000 genomes]
rs56285679	0.97[ASN][1000 genomes]
rs56342917	0.97[ASN][1000 genomes]
rs56374954	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56954792	0.97[ASN][1000 genomes]
rs61857869	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61857871	0.88[EUR][1000 genomes]
rs61859572	0.86[EUR][1000 genomes]
rs61859574	0.85[EUR][1000 genomes]
rs61859575	0.83[EUR][1000 genomes]
rs61859576	0.86[EUR][1000 genomes]
rs61859580	0.87[EUR][1000 genomes]
rs61859600	0.81[ASN][1000 genomes]
rs61859601	0.81[ASN][1000 genomes]
rs61859602	0.81[ASN][1000 genomes]
rs61859604	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61859605	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859606	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61859607	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859608	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859609	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859610	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859611	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859612	0.97[ASN][1000 genomes]
rs61859613	0.97[ASN][1000 genomes]
rs61859614	0.97[ASN][1000 genomes]
rs61859616	0.97[ASN][1000 genomes]
rs61859617	0.97[ASN][1000 genomes]
rs61859618	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7074584	0.82[EUR][1000 genomes]
rs7083785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083909	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906136	0.88[ASN][1000 genomes]
rs7912022	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7914213	DKC1	trans	cerebellum	SCAN
rs7914213	IDE	cis	parietal	SCAN
rs7914213	LOC643599	cis	multi-tissue	Pritchard
rs7914213	FGFBP3	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92742800-92750000	Enhancers	Fetal Thymus	thymus
2	chr10:92744200-92752000	Weak transcription	GM12878-XiMat	blood
3	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
4	chr10:92744400-92749800	Enhancers	Thymus	Thymus
5	chr10:92745800-92749600	Enhancers	Fetal Heart	heart
6	chr10:92746600-92753600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:92746800-92748600	Weak transcription	Psoas Muscle	Psoas
8	chr10:92746800-92748600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:92747600-92749400	Enhancers	Left Ventricle	heart
10	chr10:92748000-92755200	Enhancers	Dnd41	blood
11	chr10:92748000-92758600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links