Variant report

Variant	rs61859616
Chromosome Location	chr10:92752441-92752442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CREB1	chr10:92752079-92752704	GM12878	blood:	n/a	n/a
2	MEF2C	chr10:92752096-92752671	GM12878	blood:	n/a	n/a
3	MEF2A	chr10:92752077-92752686	GM12878	blood:	n/a	n/a
4	CEBPB	chr10:92752092-92752736	GM12878	blood:	n/a	n/a
5	MEF2A	chr10:92752094-92753756	GM12878	blood:	n/a	n/a
6	CUX1	chr10:92752428-92752443	K562	blood:	n/a	n/a
7	RUNX3	chr10:92752095-92752674	GM12878	blood:	n/a	n/a
8	FOXM1	chr10:92752081-92752717	GM12878	blood:	n/a	n/a
9	STAT5A	chr10:92752189-92752534	GM12878	blood:	n/a	n/a
10	ATF2	chr10:92752201-92752690	GM12878	blood:	n/a	n/a
11	EBF1	chr10:92752308-92752500	GM12878	blood:	n/a	n/a
12	ATF2	chr10:92752123-92752670	GM12878	blood:	n/a	n/a
13	EP300	chr10:92752144-92752604	GM12878	blood:	n/a	n/a
14	CREB1	chr10:92752177-92752611	GM12878	blood:	n/a	n/a
15	NFIC	chr10:92751803-92754094	GM12878	blood:	n/a	n/a
16	BHLHE40	chr10:92752219-92752917	GM12878	blood:	n/a	n/a
17	BATF	chr10:92752195-92752480	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92748134..92750120-chr10:92751993..92753811,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000225519	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17103779	0.88[ASN][1000 genomes]
rs17535998	1.00[ASN][1000 genomes]
rs55863711	0.97[ASN][1000 genomes]
rs55886424	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56242242	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56285679	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56342917	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374954	0.94[ASN][1000 genomes]
rs56954792	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61857869	0.94[ASN][1000 genomes]
rs61859604	0.90[ASN][1000 genomes]
rs61859605	0.94[ASN][1000 genomes]
rs61859607	0.97[ASN][1000 genomes]
rs61859608	0.97[ASN][1000 genomes]
rs61859609	0.97[ASN][1000 genomes]
rs61859610	1.00[ASN][1000 genomes]
rs61859611	1.00[ASN][1000 genomes]
rs61859612	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859613	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859614	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859617	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859618	0.94[ASN][1000 genomes]
rs7083785	0.97[ASN][1000 genomes]
rs7083909	1.00[ASN][1000 genomes]
rs7906136	0.91[ASN][1000 genomes]
rs7912022	1.00[ASN][1000 genomes]
rs7914213	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92746600-92753600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:92748000-92755200	Enhancers	Dnd41	blood
4	chr10:92748000-92758600	Weak transcription	Right Atrium	heart
5	chr10:92749400-92753600	Weak transcription	Left Ventricle	heart
6	chr10:92749800-92753800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:92749800-92753800	Weak transcription	Thymus	Thymus
8	chr10:92750600-92753600	Weak transcription	Fetal Thymus	thymus
9	chr10:92751600-92760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr10:92752000-92753000	Flanking Active TSS	GM12878-XiMat	blood
11	chr10:92752000-92754400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr10:92752000-92754800	Enhancers	NHDF-Ad	bronchial
13	chr10:92752400-92753000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links