Variant report

Variant	rs56285679
Chromosome Location	chr10:92751792-92751793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17103779	0.88[ASN][1000 genomes]
rs17535998	1.00[ASN][1000 genomes]
rs55863711	0.97[ASN][1000 genomes]
rs55886424	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56242242	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56342917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56374954	0.94[ASN][1000 genomes]
rs56954792	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61857869	0.94[ASN][1000 genomes]
rs61859604	0.90[ASN][1000 genomes]
rs61859605	0.94[ASN][1000 genomes]
rs61859607	0.97[ASN][1000 genomes]
rs61859608	0.97[ASN][1000 genomes]
rs61859609	0.97[ASN][1000 genomes]
rs61859610	1.00[ASN][1000 genomes]
rs61859611	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs61859612	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859613	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859616	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859618	0.94[ASN][1000 genomes]
rs7083785	0.97[ASN][1000 genomes]
rs7083909	1.00[ASN][1000 genomes]
rs7906136	0.91[ASN][1000 genomes]
rs7912022	1.00[ASN][1000 genomes]
rs7914213	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92752000	Weak transcription	GM12878-XiMat	blood
2	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
3	chr10:92746600-92753600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:92748000-92755200	Enhancers	Dnd41	blood
5	chr10:92748000-92758600	Weak transcription	Right Atrium	heart
6	chr10:92749400-92753600	Weak transcription	Left Ventricle	heart
7	chr10:92749800-92753800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:92749800-92753800	Weak transcription	Thymus	Thymus
9	chr10:92750600-92753600	Weak transcription	Fetal Thymus	thymus
10	chr10:92751600-92760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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