Variant report

Variant	rs61857869
Chromosome Location	chr10:92758938-92758939
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:92758405-92759236	GM12892	blood:	n/a	n/a
2	POLR2A	chr10:92758245-92759298	GM12878	blood:	n/a	n/a
3	NFIC	chr10:92757997-92760480	GM12878	blood:	n/a	n/a
4	POLR2A	chr10:92757981-92761033	GM12891	blood:	n/a	n/a
5	MAX	chr10:92758158-92759906	GM12878	blood:	n/a	chr10:92758634-92758643 chr10:92758633-92758643 chr10:92758634-92758644 chr10:92758634-92758644 chr10:92758637-92758653
6	YY1	chr10:92758625-92758997	GM12878	blood:	n/a	chr10:92758848-92758856
7	RCOR1	chr10:92758393-92760175	GM12878	blood:	n/a	n/a
8	ZNF384	chr10:92758733-92759669	GM12878	blood:	n/a	n/a
9	RELA	chr10:92758288-92760599	GM10847	blood:	n/a	n/a
10	STAT5A	chr10:92758862-92759890	GM12878	blood:	n/a	n/a
11	STAT1	chr10:92758929-92759219	GM12878	blood:	n/a	n/a
12	MTA3	chr10:92758323-92759634	GM12878	blood:	n/a	n/a
13	POU2F2	chr10:92758464-92759132	GM12878	blood:	n/a	n/a
14	NFATC1	chr10:92758303-92759016	GM12878	blood:	n/a	n/a
15	ATF2	chr10:92758343-92759908	GM12878	blood:	n/a	n/a
16	IRF3	chr10:92758935-92758939	GM12878	blood:	n/a	n/a
17	MAZ	chr10:92758449-92759734	GM12878	blood:	n/a	chr10:92758634-92758643 chr10:92758634-92758644 chr10:92758634-92758644 chr10:92758637-92758653
18	RELA	chr10:92758206-92760651	GM15510	blood:	n/a	n/a
19	POU2F2	chr10:92758498-92759206	GM12891	blood:	n/a	n/a
20	STAT5A	chr10:92758346-92759726	GM12878	blood:	n/a	n/a
21	POLR2A	chr10:92757814-92759874	GM12878	blood:	n/a	n/a
22	POLR2A	chr10:92757304-92761112	GM12878	blood:	n/a	n/a
23	RELA	chr10:92758482-92760073	GM19099	blood:	n/a	n/a
24	POLR2A	chr10:92758626-92759266	GM12892	blood:	n/a	n/a
25	MTA3	chr10:92757816-92760366	GM12878	blood:	n/a	n/a
26	NFIC	chr10:92758816-92759914	GM12878	blood:	n/a	n/a
27	CHD2	chr10:92758311-92759882	GM12878	blood:	n/a	n/a
28	WRNIP1	chr10:92757998-92759171	GM12878	blood:	n/a	n/a
29	RELA	chr10:92758467-92760011	GM18951	blood:	n/a	n/a
30	POLR2A	chr10:92758820-92758969	GM12878	blood:	n/a	n/a
31	RELA	chr10:92757948-92760399	GM12891	blood:	n/a	n/a
32	TBL1XR1	chr10:92758506-92759820	GM12878	blood:	n/a	n/a
33	RELA	chr10:92757981-92760246	GM18505	blood:	n/a	n/a
34	POLR2A	chr10:92758519-92758954	GM12891	blood:	n/a	n/a
35	POLR2A	chr10:92757922-92759267	GM12878	blood:	n/a	n/a
36	FOXM1	chr10:92758399-92760298	GM12878	blood:	n/a	n/a
37	MXI1	chr10:92758273-92759651	GM12878	blood:	n/a	chr10:92758634-92758643
38	MEF2A	chr10:92758936-92759690	GM12878	blood:	n/a	chr10:92759375-92759390 chr10:92759375-92759392
39	POLR2A	chr10:92758513-92759240	GM12892	blood:	n/a	n/a
40	RELA	chr10:92758347-92760462	GM19193	blood:	n/a	n/a
41	POLR2A	chr10:92758429-92759240	GM12892	blood:	n/a	n/a
42	RUNX3	chr10:92758338-92759142	GM12878	blood:	n/a	n/a
43	BHLHE40	chr10:92758419-92760342	GM12878	blood:	n/a	n/a
44	RUNX3	chr10:92758261-92760085	GM12878	blood:	n/a	n/a
45	EP300	chr10:92758448-92759946	GM12878	blood:	n/a	chr10:92758862-92758871
46	EBF1	chr10:92758533-92759788	GM12878	blood:	n/a	chr10:92758878-92758891
47	RELA	chr10:92758485-92760024	GM12892	blood:	n/a	n/a
48	TBP	chr10:92758425-92759533	GM12878	blood:	n/a	n/a
49	RELA	chr10:92758400-92760041	GM12878	blood:	n/a	n/a
50	NFATC1	chr10:92758420-92759012	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000273124	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs17103779	0.88[ASN][1000 genomes]
rs17535998	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17536094	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17536636	1.00[AFR][1000 genomes]
rs55801282	0.86[EUR][1000 genomes]
rs55863711	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55886424	0.94[ASN][1000 genomes]
rs56242242	0.94[ASN][1000 genomes]
rs56285679	0.94[ASN][1000 genomes]
rs56342917	0.94[ASN][1000 genomes]
rs56374954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56954792	0.94[ASN][1000 genomes]
rs61857871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61859604	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61859605	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61859606	0.87[EUR][1000 genomes]
rs61859607	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61859608	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61859609	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61859610	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61859611	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61859612	0.94[ASN][1000 genomes]
rs61859613	0.94[ASN][1000 genomes]
rs61859614	0.94[ASN][1000 genomes]
rs61859616	0.94[ASN][1000 genomes]
rs61859617	0.94[ASN][1000 genomes]
rs61859618	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7083785	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7083909	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7906136	0.91[ASN][1000 genomes]
rs7912022	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7914213	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92751600-92760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:92754400-92765400	Weak transcription	Thymus	Thymus
4	chr10:92756400-92761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:92756400-92766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:92756600-92759600	Weak transcription	Dnd41	blood
7	chr10:92757200-92759200	Flanking Active TSS	GM12878-XiMat	blood
8	chr10:92757400-92760200	Enhancers	HSMMtube	muscle
9	chr10:92758000-92759200	Enhancers	HSMM	muscle
10	chr10:92758200-92759000	Enhancers	Fetal Muscle Leg	muscle
11	chr10:92758200-92761000	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:92758400-92760400	Enhancers	Primary B cells from cord blood	blood
13	chr10:92758600-92759000	Enhancers	Fetal Heart	heart
14	chr10:92758600-92759200	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links