Variant report

Variant	rs61859618
Chromosome Location	chr10:92757423-92757424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD1-1	chr10:92757331-92757505	XLOC_008902
2	lnc-ANKRD1-1	chr10:92757237-92757470	ENSG00000273124.1

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs17103779	0.88[ASN][1000 genomes]
rs17456916	0.85[AMR][1000 genomes]
rs17535998	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55863711	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55886424	0.94[ASN][1000 genomes]
rs56075405	0.85[AMR][1000 genomes]
rs56226914	0.85[AMR][1000 genomes]
rs56242242	0.94[ASN][1000 genomes]
rs56285679	0.94[ASN][1000 genomes]
rs56342917	0.94[ASN][1000 genomes]
rs56374954	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56954792	0.94[ASN][1000 genomes]
rs61857869	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61857871	0.80[EUR][1000 genomes]
rs61859572	0.85[AMR][1000 genomes]
rs61859574	0.82[AMR][1000 genomes]
rs61859580	0.85[AMR][1000 genomes]
rs61859604	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61859605	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61859606	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61859607	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61859608	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61859609	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61859610	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61859611	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61859612	0.94[ASN][1000 genomes]
rs61859613	0.94[ASN][1000 genomes]
rs61859614	0.94[ASN][1000 genomes]
rs61859616	0.94[ASN][1000 genomes]
rs61859617	0.94[ASN][1000 genomes]
rs7074584	0.82[EUR][1000 genomes]
rs7083785	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7083909	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7906136	0.91[ASN][1000 genomes]
rs7912022	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7914213	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92748000-92758600	Weak transcription	Right Atrium	heart
3	chr10:92751600-92760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:92753800-92758200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:92754400-92765400	Weak transcription	Thymus	Thymus
6	chr10:92754600-92758000	Weak transcription	HSMM	muscle
7	chr10:92756400-92761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:92756400-92766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:92756600-92759600	Weak transcription	Dnd41	blood
10	chr10:92757200-92759200	Flanking Active TSS	GM12878-XiMat	blood
11	chr10:92757400-92760200	Enhancers	HSMMtube	muscle

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