Variant report

Variant	rs61859605
Chromosome Location	chr10:92737719-92737720
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11597992	0.84[ASN][1000 genomes]
rs11598058	0.81[ASN][1000 genomes]
rs17103779	0.82[ASN][1000 genomes]
rs17456916	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17535328	1.00[AFR][1000 genomes]
rs17535998	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17536094	0.81[EUR][1000 genomes]
rs35874668	0.81[ASN][1000 genomes]
rs55863711	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55886424	0.94[ASN][1000 genomes]
rs56075405	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56226914	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56242242	0.94[ASN][1000 genomes]
rs56285679	0.94[ASN][1000 genomes]
rs56294861	1.00[AFR][1000 genomes]
rs56342917	0.94[ASN][1000 genomes]
rs56374954	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56954792	0.94[ASN][1000 genomes]
rs61857750	1.00[AFR][1000 genomes]
rs61857751	1.00[AFR][1000 genomes]
rs61857869	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61857871	0.85[EUR][1000 genomes]
rs61859572	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61859573	0.81[AMR][1000 genomes]
rs61859574	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61859575	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61859576	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61859580	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61859600	0.84[ASN][1000 genomes]
rs61859601	0.84[ASN][1000 genomes]
rs61859602	0.84[ASN][1000 genomes]
rs61859603	1.00[AFR][1000 genomes]
rs61859604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61859607	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859608	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859609	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859610	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61859611	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61859612	0.94[ASN][1000 genomes]
rs61859613	0.94[ASN][1000 genomes]
rs61859614	0.94[ASN][1000 genomes]
rs61859616	0.94[ASN][1000 genomes]
rs61859617	0.94[ASN][1000 genomes]
rs61859618	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7083785	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7083909	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7906136	0.85[ASN][1000 genomes]
rs7912022	0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7914213	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92729200-92744400	Weak transcription	Psoas Muscle	Psoas
2	chr10:92733600-92743800	Weak transcription	Right Atrium	heart
3	chr10:92735400-92742400	Weak transcription	Left Ventricle	heart
4	chr10:92736400-92738400	Enhancers	Fetal Thymus	thymus
5	chr10:92737000-92737800	Flanking Active TSS	GM12878-XiMat	blood
6	chr10:92737000-92739200	Enhancers	Thymus	Thymus
7	chr10:92737200-92738000	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:92737200-92739200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:92737200-92742400	Genic enhancers	Dnd41	blood
10	chr10:92737400-92743800	Weak transcription	Right Ventricle	heart

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