Variant report

Variant	rs17536094
Chromosome Location	chr10:92761249-92761250
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17535998	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17536636	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs55801282	0.90[EUR][1000 genomes]
rs55863711	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs56374954	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61857869	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61857871	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61859604	0.81[EUR][1000 genomes]
rs61859605	0.81[EUR][1000 genomes]
rs61859606	0.83[EUR][1000 genomes]
rs61859607	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61859608	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs61859609	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs61859610	0.82[EUR][1000 genomes]
rs7083785	0.84[EUR][1000 genomes]
rs7083909	0.84[EUR][1000 genomes]
rs7912022	0.80[EUR][1000 genomes]
rs7914213	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92754400-92765400	Weak transcription	Thymus	Thymus
3	chr10:92756400-92761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:92756400-92766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:92760000-92765600	ZNF genes & repeats	GM12878-XiMat	blood
6	chr10:92760200-92762400	Weak transcription	HSMMtube	muscle
7	chr10:92760600-92762200	Weak transcription	Right Atrium	heart
8	chr10:92760600-92766200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr10:92761000-92761400	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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