Variant report

Variant	rs61859609
Chromosome Location	chr10:92749504-92749505
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:92749408-92749528	MCF10A-Er-Src	breast:	n/a	n/a
2	CEBPB	chr10:92749421-92749691	HepG2	liver:	n/a	chr10:92749580-92749591

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92748134..92750120-chr10:92751993..92753811,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP30-2	chr10:92748601-92750450	NONHSAT015613

Variant related genes	Relation type
ENSG00000225519	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11597992	0.81[ASN][1000 genomes]
rs17103779	0.85[ASN][1000 genomes]
rs17456916	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17535998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17536094	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs17536636	1.00[AFR][1000 genomes]
rs55863711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55886424	0.97[ASN][1000 genomes]
rs56075405	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56226914	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56242242	0.97[ASN][1000 genomes]
rs56285679	0.97[ASN][1000 genomes]
rs56342917	0.97[ASN][1000 genomes]
rs56374954	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56954792	0.97[ASN][1000 genomes]
rs61857869	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61857871	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61859572	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61859573	0.81[AMR][1000 genomes]
rs61859574	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs61859575	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61859576	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61859580	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61859600	0.81[ASN][1000 genomes]
rs61859601	0.81[ASN][1000 genomes]
rs61859602	0.81[ASN][1000 genomes]
rs61859604	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61859605	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859606	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs61859607	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859610	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859611	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859612	0.97[ASN][1000 genomes]
rs61859613	0.97[ASN][1000 genomes]
rs61859614	0.97[ASN][1000 genomes]
rs61859616	0.97[ASN][1000 genomes]
rs61859617	0.97[ASN][1000 genomes]
rs61859618	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7074584	0.82[EUR][1000 genomes]
rs7083785	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7083909	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7906136	0.88[ASN][1000 genomes]
rs7912022	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914213	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92742800-92750000	Enhancers	Fetal Thymus	thymus
2	chr10:92744200-92752000	Weak transcription	GM12878-XiMat	blood
3	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
4	chr10:92744400-92749800	Enhancers	Thymus	Thymus
5	chr10:92745800-92749600	Enhancers	Fetal Heart	heart
6	chr10:92746600-92753600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:92748000-92755200	Enhancers	Dnd41	blood
8	chr10:92748000-92758600	Weak transcription	Right Atrium	heart
9	chr10:92749200-92749800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr10:92749400-92753600	Weak transcription	Left Ventricle	heart

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