Variant report

Variant	rs7074584
Chromosome Location	chr10:92757396-92757397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1318550	0.83[JPT][hapmap]
rs17535998	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs55863711	0.81[EUR][1000 genomes]
rs61859606	0.81[EUR][1000 genomes]
rs61859607	0.81[EUR][1000 genomes]
rs61859609	0.82[EUR][1000 genomes]
rs61859610	0.81[EUR][1000 genomes]
rs61859618	0.82[EUR][1000 genomes]
rs7083785	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs7083909	0.82[EUR][1000 genomes]
rs7914213	0.82[EUR][1000 genomes]
rs9325454	0.83[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs7074584	IDE	cis	parietal	SCAN
rs7074584	CYP2C19	cis	parietal	SCAN
rs7074584	LOC643599	cis	multi-tissue	Pritchard
rs7074584	FGFBP3	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92748000-92758600	Weak transcription	Right Atrium	heart
3	chr10:92751600-92760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:92753800-92758200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:92754400-92757400	Weak transcription	HSMMtube	muscle
6	chr10:92754400-92765400	Weak transcription	Thymus	Thymus
7	chr10:92754600-92758000	Weak transcription	HSMM	muscle
8	chr10:92756400-92761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:92756400-92766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:92756600-92759600	Weak transcription	Dnd41	blood
11	chr10:92757200-92759200	Flanking Active TSS	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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