Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:92757304-92761112	GM12878	blood:	n/a	n/a
2	GATA2	chr10:92757387-92758240	SH-SY5Y	brain:	n/a	n/a
3	EP300	chr10:92757241-92758722	SK-N-SH	brain:	n/a	chr10:92757257-92757271 chr10:92757294-92757308
4	GATA3	chr10:92757537-92758583	SH-SY5Y	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000273124	TF binding region

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10785983	0.81[EUR][1000 genomes]
rs10785984	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881872	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10881873	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11186407	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12217709	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1318550	0.82[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1439092	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1439093	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1439094	0.84[EUR][1000 genomes]
rs1439095	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1561446	0.91[CEU][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4933203	0.83[AMR][1000 genomes]
rs4933634	0.80[ASN][1000 genomes]
rs7074584	0.81[ASN][1000 genomes]
rs7077120	0.96[ASN][1000 genomes]
rs7078333	0.92[ASN][1000 genomes]
rs7080368	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7081190	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7087402	0.92[ASN][1000 genomes]
rs7092557	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs747335	0.83[ASN][1000 genomes]
rs7910488	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7916703	0.81[EUR][1000 genomes]
rs9325455	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs934900	0.92[ASN][1000 genomes]
rs934901	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92748000-92758600	Weak transcription	Right Atrium	heart
3	chr10:92751600-92760200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:92753800-92758200	Weak transcription	Primary B cells from peripheral blood	blood
5	chr10:92754400-92765400	Weak transcription	Thymus	Thymus
6	chr10:92754600-92758000	Weak transcription	HSMM	muscle
7	chr10:92756400-92761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:92756400-92766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr10:92756600-92759600	Weak transcription	Dnd41	blood
10	chr10:92757200-92759200	Flanking Active TSS	GM12878-XiMat	blood
11	chr10:92757400-92760200	Enhancers	HSMMtube	muscle
12	chr10:92757800-92758600	Weak transcription	Fetal Heart	heart

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