Variant report

Variant	rs7910488
Chromosome Location	chr10:92775373-92775374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10785984	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1318550	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1561446	0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs3852489	0.83[AMR][1000 genomes]
rs3895826	0.83[AMR][1000 genomes]
rs4933203	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7077120	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7078333	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7087402	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7092557	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9325454	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9325455	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs934900	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs934901	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv430255	chr10:92769660-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv430258	chr10:92770145-92817973	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv430256	chr10:92770145-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92761800-92782800	Weak transcription	Aorta	Aorta
2	chr10:92767400-92781400	Weak transcription	HSMM	muscle
3	chr10:92771200-92777200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:92772200-92776200	Weak transcription	GM12878-XiMat	blood
5	chr10:92772400-92780200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:92775200-92777000	Weak transcription	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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