Variant report

Variant	rs7092557
Chromosome Location	chr10:92760517-92760518
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10785984	0.94[ASN][1000 genomes]
rs12217709	0.81[ASN][1000 genomes]
rs1318550	0.98[ASN][1000 genomes]
rs1561446	0.82[ASN][1000 genomes]
rs7076190	0.83[AMR][1000 genomes]
rs7077120	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7078333	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7080368	0.81[ASN][1000 genomes]
rs7081190	0.81[ASN][1000 genomes]
rs7087402	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs747335	0.81[ASN][1000 genomes]
rs7910488	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9325454	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9325455	0.98[ASN][1000 genomes]
rs934900	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs934901	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92754400-92765400	Weak transcription	Thymus	Thymus
3	chr10:92756400-92761600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:92756400-92766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:92758200-92761000	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:92759600-92761000	Enhancers	Dnd41	blood
7	chr10:92759800-92760600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:92760000-92765600	ZNF genes & repeats	GM12878-XiMat	blood
9	chr10:92760200-92760600	Enhancers	Right Atrium	heart
10	chr10:92760200-92762400	Weak transcription	HSMMtube	muscle
11	chr10:92760400-92761000	Enhancers	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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