Variant report

Variant	rs934901
Chromosome Location	chr10:92769660-92769661
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10785984	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1318550	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1561446	0.94[JPT][hapmap]
rs7076190	0.81[AMR][1000 genomes]
rs7077120	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7078333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7087402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7092557	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7910488	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9325454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.92[ASN][1000 genomes]
rs9325455	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs934900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv430255	chr10:92769660-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92761800-92782800	Weak transcription	Aorta	Aorta
2	chr10:92765200-92770000	Enhancers	Fetal Thymus	thymus
3	chr10:92767200-92770600	Weak transcription	Osteobl	bone
4	chr10:92767400-92781400	Weak transcription	HSMM	muscle
5	chr10:92768000-92770000	Enhancers	Dnd41	blood
6	chr10:92768600-92769800	Enhancers	Fetal Muscle Leg	muscle
7	chr10:92768600-92770000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:92768800-92769800	Enhancers	Primary B cells from peripheral blood	blood
9	chr10:92769600-92769800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:92769600-92769800	Enhancers	Brain Substantia Nigra	brain
11	chr10:92769600-92770200	Enhancers	GM12878-XiMat	blood
12	chr10:92769600-92770800	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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