Variant report

Variant	rs7078333
Chromosome Location	chr10:92768352-92768353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10785984	0.97[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1318550	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1561446	0.95[JPT][hapmap]
rs7076190	0.81[AMR][1000 genomes]
rs7077120	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7087402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7092557	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7910488	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9325454	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9325455	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs934900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs934901	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92761800-92782800	Weak transcription	Aorta	Aorta
2	chr10:92765200-92770000	Enhancers	Fetal Thymus	thymus
3	chr10:92765400-92768400	Enhancers	Primary B cells from peripheral blood	blood
4	chr10:92766600-92768600	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:92766800-92769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr10:92767000-92768400	Enhancers	Brain Anterior Caudate	brain
7	chr10:92767000-92768600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr10:92767200-92768600	Weak transcription	Fetal Heart	heart
9	chr10:92767200-92768600	Weak transcription	HSMMtube	muscle
10	chr10:92767200-92770600	Weak transcription	Osteobl	bone
11	chr10:92767400-92781400	Weak transcription	HSMM	muscle
12	chr10:92767800-92769000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr10:92768000-92769000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:92768000-92769000	Weak transcription	Thymus	Thymus
15	chr10:92768000-92770000	Enhancers	Dnd41	blood
16	chr10:92768200-92768600	Weak transcription	Primary T cells from cord blood	blood
17	chr10:92768200-92769200	Enhancers	GM12878-XiMat	blood
18	chr10:92768200-92769600	Weak transcription	Brain Substantia Nigra	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links