Variant report

Variant	rs9325455
Chromosome Location	chr10:92766878-92766879
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10785984	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1318550	0.93[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1561446	0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3852489	0.83[AMR][1000 genomes]
rs3895826	0.83[AMR][1000 genomes]
rs4933203	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7077120	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7078333	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7087402	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7092557	0.98[ASN][1000 genomes]
rs7910488	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9325454	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs934900	0.96[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs934901	0.97[AFR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9325455	LIPK	cis	cerebellum	SCAN
rs9325455	IFIT1B	cis	parietal	SCAN

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92761800-92782800	Weak transcription	Aorta	Aorta
2	chr10:92765200-92767000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr10:92765200-92770000	Enhancers	Fetal Thymus	thymus
4	chr10:92765400-92767200	Enhancers	Fetal Heart	heart
5	chr10:92765400-92768000	Enhancers	Thymus	Thymus
6	chr10:92765400-92768400	Enhancers	Primary B cells from peripheral blood	blood
7	chr10:92765800-92768200	Enhancers	Primary T cells from cord blood	blood
8	chr10:92766000-92767000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:92766000-92768000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr10:92766200-92767000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:92766200-92767000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:92766200-92767200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr10:92766200-92767200	Enhancers	Osteobl	bone
14	chr10:92766200-92767400	Enhancers	Primary B cells from cord blood	blood
15	chr10:92766200-92767600	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr10:92766200-92767600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr10:92766200-92767800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr10:92766200-92768000	Enhancers	Brain Angular Gyrus	brain
19	chr10:92766200-92768200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr10:92766200-92768200	Enhancers	Brain Cingulate Gyrus	brain
21	chr10:92766400-92767000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:92766400-92767400	Enhancers	HSMM	muscle
23	chr10:92766400-92767800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr10:92766400-92767800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:92766400-92767800	Enhancers	Brain Hippocampus Middle	brain
26	chr10:92766400-92768000	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr10:92766400-92768200	Enhancers	Brain Substantia Nigra	brain
28	chr10:92766600-92767000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr10:92766600-92767600	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:92766600-92767600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:92766600-92768600	Weak transcription	Fetal Muscle Leg	muscle
32	chr10:92766800-92767000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr10:92766800-92767000	Flanking Active TSS	Brain Anterior Caudate	brain
34	chr10:92766800-92767000	Enhancers	GM12878-XiMat	blood
35	chr10:92766800-92767200	Enhancers	Dnd41	blood
36	chr10:92766800-92767200	Enhancers	HSMMtube	muscle
37	chr10:92766800-92767800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr10:92766800-92767800	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr10:92766800-92768000	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr10:92766800-92769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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