Variant report

Variant	rs61859576
Chromosome Location	chr10:92712470-92712471
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11597992	0.90[ASN][1000 genomes]
rs11598058	0.93[ASN][1000 genomes]
rs17456916	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17535328	0.85[EUR][1000 genomes]
rs17535998	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2141374	0.85[AFR][1000 genomes]
rs35874668	0.93[ASN][1000 genomes]
rs55863711	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56075405	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56226914	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56294861	0.86[EUR][1000 genomes]
rs61857750	0.86[EUR][1000 genomes]
rs61857751	0.86[EUR][1000 genomes]
rs61857752	0.94[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61859572	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61859573	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61859574	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859575	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859580	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859600	0.90[ASN][1000 genomes]
rs61859601	0.90[ASN][1000 genomes]
rs61859602	0.90[ASN][1000 genomes]
rs61859604	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61859605	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61859606	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61859607	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61859608	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61859609	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61859610	0.84[EUR][1000 genomes]
rs61859611	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7083785	0.86[EUR][1000 genomes]
rs7083909	0.86[EUR][1000 genomes]
rs7912022	0.84[EUR][1000 genomes]
rs7914213	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	esv19293	chr10:92708763-92723506	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92707600-92719400	Weak transcription	HMEC	breast
2	chr10:92707800-92719200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr10:92708000-92714400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr10:92709000-92714200	Weak transcription	Fetal Thymus	thymus
5	chr10:92711800-92712800	Weak transcription	Dnd41	blood

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