Variant report

Variant	rs61876077
Chromosome Location	chr11:23782952-23782953
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-17A1.2.1-2	chr11:23782899-23783176	XLOC_009394
2	lnc-RP11-17A1.2.1-2	chr11:23782876-23783176	ENSG00000254861

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11819925	0.96[EUR][1000 genomes]
rs11820608	0.96[EUR][1000 genomes]
rs11820669	0.96[EUR][1000 genomes]
rs11822638	0.96[EUR][1000 genomes]
rs11825290	0.90[EUR][1000 genomes]
rs11826810	0.98[EUR][1000 genomes]
rs11827258	0.98[EUR][1000 genomes]
rs11827769	0.96[EUR][1000 genomes]
rs11828396	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11828544	0.91[EUR][1000 genomes]
rs4265597	0.91[EUR][1000 genomes]
rs4337039	0.86[EUR][1000 genomes]
rs4641473	0.91[EUR][1000 genomes]
rs56725851	1.00[EUR][1000 genomes]
rs57681918	0.96[EUR][1000 genomes]
rs58247909	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58471055	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58510850	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61467820	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61699497	0.96[EUR][1000 genomes]
rs61876062	0.89[EUR][1000 genomes]
rs61876063	0.89[EUR][1000 genomes]
rs61876065	0.98[EUR][1000 genomes]
rs61876066	0.89[EUR][1000 genomes]
rs61876067	0.91[EUR][1000 genomes]
rs61876068	0.91[EUR][1000 genomes]
rs61876069	0.89[EUR][1000 genomes]
rs61876070	0.89[EUR][1000 genomes]
rs61876071	0.89[EUR][1000 genomes]
rs61876074	0.89[EUR][1000 genomes]
rs61876075	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876076	0.98[EUR][1000 genomes]
rs61876078	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876082	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876083	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876084	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876085	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876087	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876110	0.98[EUR][1000 genomes]
rs61876111	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876112	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876114	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876115	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876117	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61876118	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7116643	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73423725	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73439876	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553757	chr11:23564329-23896729	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv897062	chr11:23687928-24031627	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv916840	chr11:23710275-24064119	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv897063	chr11:23723766-23940407	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv897064	chr11:23767292-23859991	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv897065	chr11:23767292-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv897066	chr11:23777459-23859991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv897067	chr11:23777459-23861558	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv897068	chr11:23777459-23882931	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv976526	chr11:23780807-23794569	ZNF genes & repeats Enhancers Weak transcription	lncRNA	n/a	inside rSNPs	diseases
11	nsv553765	chr11:23781534-23833286	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv553766	chr11:23781534-23841175	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv467741	chr11:23781534-23944659	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv553767	chr11:23781534-23944659	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:23781400-23785400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:23781400-23787200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:23782000-23783200	Enhancers	Fetal Lung	lung
4	chr11:23782400-23783200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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