Variant report

Variant	rs61881676
Chromosome Location	chr11:16157722-16157723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12417996	0.83[AFR][1000 genomes]
rs12420134	0.83[AFR][1000 genomes]
rs12791361	0.91[AFR][1000 genomes]
rs12800654	0.91[AFR][1000 genomes]
rs17461712	0.83[AFR][1000 genomes]
rs17538814	0.91[AFR][1000 genomes]
rs61881678	0.83[AFR][1000 genomes]
rs61881741	0.83[AFR][1000 genomes]
rs61881745	0.83[AFR][1000 genomes]
rs61883185	0.83[AFR][1000 genomes]
rs61883197	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv553562	chr11:16112180-16220289	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv529731	chr11:16122782-16468170	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:16148400-16160200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:16156400-16158400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr11:16157400-16157800	ZNF genes & repeats	Fetal Intestine Small	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links