Variant report

Variant	rs61881881
Chromosome Location	chr11:17250814-17250815
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1236311	0.80[EUR][1000 genomes]
rs12577525	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12577815	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17473243	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17561348	0.85[EUR][1000 genomes]
rs17641418	0.85[EUR][1000 genomes]
rs214091	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs214098	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs214903	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs214932	0.86[EUR][1000 genomes]
rs214933	0.86[EUR][1000 genomes]
rs214934	0.87[EUR][1000 genomes]
rs214938	0.86[EUR][1000 genomes]
rs34724588	0.84[EUR][1000 genomes]
rs34941502	0.83[EUR][1000 genomes]
rs3950680	0.85[EUR][1000 genomes]
rs476890	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs492263	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs522619	0.87[EUR][1000 genomes]
rs569780	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs586785	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs60173525	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs615424	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61881877	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs644419	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs664382	0.86[EUR][1000 genomes]
rs665311	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs679201	0.87[EUR][1000 genomes]
rs7108067	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467711	chr11:17027555-17320797	Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	nsv553568	chr11:17027555-17320797	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv469762	chr11:17170690-17320691	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv482905	chr11:17170690-17320691	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv975155	chr11:17247352-17252105	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61881881	NUCB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17232800-17251200	Weak transcription	Lung	lung
2	chr11:17233200-17251800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr11:17241000-17251600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:17244400-17252000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr11:17244800-17251800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:17245200-17251800	Weak transcription	Hela-S3	cervix
7	chr11:17246600-17251000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr11:17246800-17251200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:17246800-17251400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:17246800-17251400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr11:17247000-17251400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:17247400-17251200	Weak transcription	HUVEC	blood vessel
13	chr11:17250000-17252200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:17250800-17251600	Weak transcription	Monocytes-CD14+_RO01746	blood

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