Variant report

Variant	rs61882454
Chromosome Location	chr11:17935906-17935907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:17935767..17938091-chr11:17939422..17941128,2	MCF-7	breast:
2	chr11:17935692..17938067-chr11:17939398..17942112,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12290125	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17720417	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17720513	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17721184	0.83[AMR][1000 genomes]
rs17794213	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2237912	0.85[AMR][1000 genomes]
rs2237921	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2283236	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2283239	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34614478	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs394218	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3993323	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3993324	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs440234	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4438010	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4756927	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4757604	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4757605	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4757606	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61882456	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61882460	0.81[AMR][1000 genomes]
rs61882461	0.85[AMR][1000 genomes]
rs61884488	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61884489	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61884492	0.88[AMR][1000 genomes]
rs61884493	0.90[AMR][1000 genomes]
rs61884494	0.85[AMR][1000 genomes]
rs758437	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832078	chr11:17780503-17953521	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
2	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv897026	chr11:17823296-18084878	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv832079	chr11:17927967-18047743	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv975386	chr11:17930319-17937152	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:17838400-17971600	Weak transcription	Gastric	stomach
2	chr11:17863800-17939200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:17864400-17944800	Weak transcription	Ovary	ovary
4	chr11:17882800-17943800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:17885800-17939200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr11:17886000-17965200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr11:17895200-17939000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr11:17895800-17937200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr11:17895800-17943400	Weak transcription	Pancreas	Pancrea
10	chr11:17896000-17944600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr11:17896000-17968000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:17896400-17939200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr11:17896400-17968000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:17896800-17939200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:17897400-17939400	Weak transcription	Adipose Nuclei	Adipose
16	chr11:17898800-17944200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr11:17899200-17943400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:17906000-17970200	Weak transcription	Lung	lung
19	chr11:17910600-17947000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:17914400-17938800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr11:17914400-17939200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:17914600-17965400	Weak transcription	Primary hematopoietic stem cells	blood
23	chr11:17914800-17939000	Weak transcription	Dnd41	blood
24	chr11:17914800-17939200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:17915400-17943000	Weak transcription	Spleen	Spleen
26	chr11:17915600-17939400	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr11:17915800-17966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr11:17917000-17943200	Weak transcription	Brain Cingulate Gyrus	brain
29	chr11:17917000-17944600	Weak transcription	Brain Angular Gyrus	brain
30	chr11:17917000-17947600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:17917200-17938800	Weak transcription	Primary T helper cells fromperipheralblood	blood
32	chr11:17920600-17976000	Weak transcription	Esophagus	oesophagus
33	chr11:17923600-17939600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr11:17924200-17937200	Weak transcription	Psoas Muscle	Psoas
35	chr11:17927000-17939200	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr11:17927600-17944600	Weak transcription	Left Ventricle	heart
37	chr11:17928000-17939200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr11:17928000-17939200	Weak transcription	Brain Hippocampus Middle	brain
39	chr11:17928600-17940800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr11:17928600-17946200	Weak transcription	Fetal Thymus	thymus
41	chr11:17928600-17970200	Weak transcription	Thymus	Thymus
42	chr11:17928800-17937600	Weak transcription	HSMMtube	muscle
43	chr11:17929000-17942200	Weak transcription	Brain Anterior Caudate	brain
44	chr11:17929200-17939000	Weak transcription	GM12878-XiMat	blood
45	chr11:17929200-17954800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr11:17929400-17939000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr11:17929400-17943000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr11:17931200-17939000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr11:17931200-17939200	Weak transcription	Fetal Brain Female	brain
50	chr11:17931800-17938200	Weak transcription	Primary B cells from cord blood	blood

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