Variant report

Variant	rs61882571
Chromosome Location	chr11:45395020-45395021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2122839	1.00[ASN][1000 genomes]
rs61882570	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530619	chr11:45294176-45553928	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv467869	chr11:45389225-45415035	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv554185	chr11:45389225-45415035	Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45388400-45395800	Weak transcription	Liver	Liver
2	chr11:45393000-45395600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr11:45393200-45395400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr11:45393200-45395400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr11:45393200-45395800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr11:45393400-45395800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr11:45393400-45395800	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr11:45393400-45395800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:45393400-45395800	Weak transcription	Thymus	Thymus
10	chr11:45393400-45396400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:45393800-45397000	Enhancers	Fetal Thymus	thymus
12	chr11:45393800-45406200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:45394200-45406200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:45394400-45395200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr11:45394400-45396400	Weak transcription	Fetal Brain Male	brain
16	chr11:45394400-45403000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr11:45395000-45395200	Weak transcription	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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