Variant report

Variant	rs61884156
Chromosome Location	chr11:46290615-46290616
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46289728..46292043-chr11:46292788..46296909,3	K562	blood:
2	chr11:46288486..46291274-chr11:46297327..46299481,2	K562	blood:
3	chr11:46277054..46280118-chr11:46289490..46292654,3	MCF-7	breast:
4	chr11:46280785..46282424-chr11:46289804..46291886,2	MCF-7	breast:
5	chr11:46289483..46292043-chr11:46292788..46295416,3	K562	blood:
6	chr11:46282905..46285214-chr11:46289577..46292094,3	K562	blood:

Variant related genes	Relation type
ENSG00000157613	Chromatin interaction
ENSG00000255007	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11038843	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11038851	0.88[ASN][1000 genomes]
rs61884157	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61884158	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61885561	0.81[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7105423	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7106583	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46287000-46291800	Weak transcription	Fetal Intestine Small	intestine
2	chr11:46287400-46292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:46287400-46294000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:46287600-46292000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr11:46287600-46293200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:46287600-46293600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr11:46287600-46293600	Weak transcription	Right Atrium	heart
8	chr11:46287800-46292000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:46287800-46292400	Weak transcription	K562	blood
10	chr11:46287800-46293400	Weak transcription	Left Ventricle	heart
11	chr11:46288000-46292200	Weak transcription	Gastric	stomach
12	chr11:46288000-46293600	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr11:46288400-46293600	Weak transcription	Adipose Nuclei	Adipose
14	chr11:46288600-46292200	Weak transcription	Stomach Mucosa	stomach
15	chr11:46288800-46293000	Enhancers	GM12878-XiMat	blood
16	chr11:46290200-46292000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:46290200-46292200	Weak transcription	Primary hematopoietic stem cells	blood
18	chr11:46290200-46293800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr11:46290600-46290800	Enhancers	Colon Smooth Muscle	Colon
20	chr11:46290600-46291200	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr11:46290600-46291200	Enhancers	Rectal Mucosa Donor 31	rectum

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