Variant report

Variant	rs61884158
Chromosome Location	chr11:46292362-46292363
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:46287117..46289600-chr11:46291560..46294063,4	K562	blood:
2	chr11:46277054..46280118-chr11:46289490..46292654,3	MCF-7	breast:
3	chr11:46286495..46289177-chr11:46292073..46294066,2	K562	blood:
4	chr11:46291995..46293789-chr11:46294301..46296591,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255007	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11038843	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11038851	0.81[ASN][1000 genomes]
rs61884156	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61884157	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61885561	0.89[ASN][1000 genomes]
rs7105423	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7106583	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051344	chr11:46188818-46306447	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
2	nsv541028	chr11:46188818-46306447	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
3	nsv554201	chr11:46281835-46422686	Active TSS Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:46287400-46292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
2	chr11:46287400-46294000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:46287600-46293200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr11:46287600-46293600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:46287600-46293600	Weak transcription	Right Atrium	heart
6	chr11:46287800-46292400	Weak transcription	K562	blood
7	chr11:46287800-46293400	Weak transcription	Left Ventricle	heart
8	chr11:46288000-46293600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr11:46288400-46293600	Weak transcription	Adipose Nuclei	Adipose
10	chr11:46288800-46293000	Enhancers	GM12878-XiMat	blood
11	chr11:46290200-46293800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr11:46291200-46292800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:46291200-46292800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:46291800-46292400	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr11:46291800-46293000	Enhancers	Fetal Intestine Small	intestine
16	chr11:46292000-46292400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:46292000-46292800	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:46292000-46293400	Weak transcription	Fetal Intestine Large	intestine
19	chr11:46292000-46297600	Enhancers	Placenta	Placenta
20	chr11:46292200-46292400	Enhancers	Primary hematopoietic stem cells	blood
21	chr11:46292200-46292400	Enhancers	Pancreas	Pancrea
22	chr11:46292200-46292600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:46292200-46293600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:46292200-46294200	Enhancers	Gastric	stomach
25	chr11:46292200-46295200	Enhancers	Stomach Mucosa	stomach

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