Variant report

Variant	rs61886075
Chromosome Location	chr11:63568355-63568356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2959872	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs522648	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs542966	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs545539	0.90[EUR][1000 genomes]
rs566255	0.81[EUR][1000 genomes]
rs580083	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61928249	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61928251	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7113325	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7121664	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051171	chr11:62987064-63835715	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
2	nsv468589	chr11:63515752-63713239	Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv555180	chr11:63515752-63713239	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
4	esv3413647	chr11:63550425-63582789	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv512231	chr11:63568008-63569488	Weak transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv3470718	chr11:63568182-63569442	Weak transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	esv3470730	chr11:63568182-63569442	Weak transcription Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:63565000-63570200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:63565000-63573800	Weak transcription	Right Atrium	heart
3	chr11:63567600-63568600	Weak transcription	Hela-S3	cervix
4	chr11:63567600-63580000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:63568200-63570400	Weak transcription	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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