Variant report

Variant	rs61886733
Chromosome Location	chr11:57334678-57334679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57226847..57229273-chr11:57333715..57336392,3	K562	blood:
2	chr11:57334539..57338384-chr11:57406664..57411574,5	MCF-7	breast:
3	chr11:57327644..57330005-chr11:57333922..57337612,3	MCF-7	breast:
4	chr11:57327395..57330441-chr11:57334291..57337676,3	K562	blood:
5	chr11:57333149..57335001-chr11:57423752..57425633,2	MCF-7	breast:
6	chr11:57333866..57335515-chr11:57412954..57415220,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000156587	Chromatin interaction
ENSG00000166793	Chromatin interaction
ENSG00000186907	Chromatin interaction
ENSG00000208009	Chromatin interaction
ENSG00000254602	Chromatin interaction
ENSG00000172409	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10792104	0.92[ASN][1000 genomes]
rs10792106	0.92[ASN][1000 genomes]
rs10792107	0.92[ASN][1000 genomes]
rs11229057	0.92[ASN][1000 genomes]
rs28362945	0.82[ASN][1000 genomes]
rs3891975	0.95[ASN][1000 genomes]
rs4938871	0.92[ASN][1000 genomes]
rs4938873	0.92[ASN][1000 genomes]
rs4939152	0.92[ASN][1000 genomes]
rs4939153	0.92[ASN][1000 genomes]
rs61886736	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886997	0.84[ASN][1000 genomes]
rs61887019	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7112126	0.92[ASN][1000 genomes]
rs7123582	0.92[ASN][1000 genomes]
rs7124330	0.92[ASN][1000 genomes]
rs7128015	0.92[ASN][1000 genomes]
rs7131076	0.92[ASN][1000 genomes]
rs7940223	0.92[ASN][1000 genomes]
rs7950126	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1051032	chr11:57290124-57363064	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv541049	chr11:57290124-57363064	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv1052073	chr11:57297499-57362802	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv541050	chr11:57297499-57362802	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	nsv832163	chr11:57299354-57481050	Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
9	nsv1040913	chr11:57315006-57696122	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57320600-57334800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:57332800-57334800	Flanking Active TSS	Primary T cells from cord blood	blood
3	chr11:57332800-57335000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:57333000-57334800	Flanking Active TSS	Primary hematopoietic stem cells	blood
5	chr11:57333000-57335000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr11:57333000-57335000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:57333000-57335000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
8	chr11:57333200-57334800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:57333200-57334800	Flanking Active TSS	Fetal Lung	lung
10	chr11:57333200-57335000	Flanking Active TSS	Liver	Liver
11	chr11:57333200-57335800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:57333200-57336000	Active TSS	GM12878-XiMat	blood
13	chr11:57333200-57336200	Active TSS	Rectal Mucosa Donor 29	rectum
14	chr11:57333200-57336400	Active TSS	Fetal Brain Female	brain
15	chr11:57333400-57334800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr11:57333400-57334800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
17	chr11:57333400-57334800	Flanking Active TSS	Primary B cells from peripheral blood	blood
18	chr11:57333400-57334800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:57333400-57334800	Flanking Active TSS	Fetal Intestine Small	intestine
20	chr11:57333400-57334800	Flanking Active TSS	Osteobl	bone
21	chr11:57333400-57335000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
22	chr11:57333400-57335000	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr11:57333400-57335000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:57333400-57335000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:57333400-57335000	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr11:57333400-57335000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr11:57333400-57335800	Active TSS	Small Intestine	intestine
28	chr11:57333400-57336000	Active TSS	Left Ventricle	heart
29	chr11:57333400-57336000	Active TSS	HSMMtube	muscle
30	chr11:57333600-57334800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:57333600-57334800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr11:57333600-57334800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
33	chr11:57333600-57335000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:57333600-57335000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:57333600-57335800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
36	chr11:57333600-57335800	Active TSS	Primary T helper naive cells from peripheral blood	blood
37	chr11:57333600-57335800	Active TSS	Primary T helper cells PMA-I stimulated	--
38	chr11:57333600-57335800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:57333600-57335800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr11:57333600-57335800	Active TSS	Primary T killer memory cells from peripheral blood	blood
41	chr11:57333600-57335800	Active TSS	Right Ventricle	heart
42	chr11:57333600-57336000	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr11:57333600-57336000	Active TSS	Ovary	ovary
44	chr11:57333600-57336000	Active TSS	Thymus	Thymus
45	chr11:57333600-57336000	Active TSS	NHDF-Ad	bronchial
46	chr11:57333600-57336200	Active TSS	Fetal Kidney	kidney
47	chr11:57333800-57335000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr11:57333800-57335000	Flanking Active TSS	HSMM	muscle
49	chr11:57333800-57335800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
50	chr11:57333800-57335800	Active TSS	Spleen	Spleen

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