Variant report

Variant	rs61886997
Chromosome Location	chr11:57292810-57292811
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:57292477..57296508-chr11:57296772..57299777,9	K562	blood:
2	chr11:57112463..57114876-chr11:57292592..57294764,2	K562	blood:
3	chr11:57261958..57264952-chr11:57292189..57295088,2	K562	blood:
4	chr11:57259469..57263127-chr11:57289484..57293312,4	K562	blood:
5	chr11:57281961..57284299-chr11:57292133..57294822,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000149150	Chromatin interaction
ENSG00000134809	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10792101	0.91[ASN][1000 genomes]
rs35253626	0.90[ASN][1000 genomes]
rs4938869	0.91[ASN][1000 genomes]
rs4939149	0.91[ASN][1000 genomes]
rs61886733	0.84[ASN][1000 genomes]
rs61886736	0.84[ASN][1000 genomes]
rs61887019	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7101425	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044030	chr11:57073395-58035564	Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
2	nsv541047	chr11:57073395-58035564	Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	136 gene(s)	inside rSNPs	diseases
3	nsv530621	chr11:57139699-57703639	Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
4	nsv1051032	chr11:57290124-57363064	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv541049	chr11:57290124-57363064	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:57283400-57297400	Weak transcription	Gastric	stomach
2	chr11:57283600-57295200	Weak transcription	Lung	lung
3	chr11:57283600-57296000	Weak transcription	Spleen	Spleen
4	chr11:57283600-57296200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:57283800-57293800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:57283800-57293800	Weak transcription	HUVEC	blood vessel
7	chr11:57283800-57294400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr11:57283800-57294400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:57283800-57294600	Weak transcription	Primary T cells from cord blood	blood
10	chr11:57283800-57295000	Weak transcription	NHLF	lung
11	chr11:57283800-57295000	Weak transcription	Osteobl	bone
12	chr11:57283800-57295200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:57283800-57295200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr11:57283800-57295200	Weak transcription	Brain Anterior Caudate	brain
15	chr11:57283800-57295200	Weak transcription	Fetal Intestine Small	intestine
16	chr11:57283800-57295200	Weak transcription	Fetal Muscle Leg	muscle
17	chr11:57283800-57295800	Weak transcription	Fetal Intestine Large	intestine
18	chr11:57283800-57296000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:57283800-57296000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr11:57283800-57296000	Weak transcription	Left Ventricle	heart
21	chr11:57283800-57296200	Weak transcription	HSMM	muscle
22	chr11:57283800-57296400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr11:57283800-57296600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr11:57283800-57296600	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:57283800-57297000	Weak transcription	Brain Angular Gyrus	brain
26	chr11:57283800-57297200	Weak transcription	Fetal Lung	lung
27	chr11:57283800-57297200	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr11:57283800-57297200	Weak transcription	Rectal Smooth Muscle	rectum
29	chr11:57283800-57297200	Weak transcription	Right Atrium	heart
30	chr11:57283800-57297200	Weak transcription	NH-A	brain
31	chr11:57283800-57297400	Weak transcription	Colonic Mucosa	Colon
32	chr11:57283800-57297400	Weak transcription	HSMMtube	muscle
33	chr11:57284000-57294000	Weak transcription	GM12878-XiMat	blood
34	chr11:57284000-57294200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr11:57284000-57294600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr11:57284000-57295800	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr11:57284000-57296000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr11:57284000-57296000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:57284000-57296000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr11:57284000-57296000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:57284000-57297000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr11:57284000-57297000	Weak transcription	NHDF-Ad	bronchial
43	chr11:57284200-57295800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:57284400-57296000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr11:57284800-57297000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:57285400-57296200	Weak transcription	Primary B cells from cord blood	blood
47	chr11:57285800-57295200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:57286600-57297200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr11:57287600-57297200	Weak transcription	Fetal Brain Male	brain
50	chr11:57288200-57293800	Weak transcription	Dnd41	blood

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