Variant report

Variant	rs61886737
Chromosome Location	chr11:56839991-56839992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10501362	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17649150	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61886718	0.81[EUR][1000 genomes]
rs61886739	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72914002	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7938578	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56837600-56841200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:56839000-56841000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:56839200-56841200	Enhancers	Hela-S3	cervix
4	chr11:56839200-56841200	Enhancers	NH-A	brain
5	chr11:56839200-56841200	Enhancers	NHEK	skin
6	chr11:56839400-56840000	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:56839400-56840000	Enhancers	Stomach Mucosa	stomach
8	chr11:56839400-56841000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:56839400-56841000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:56839400-56841000	Enhancers	HUVEC	blood vessel
11	chr11:56839400-56841000	Enhancers	Osteobl	bone
12	chr11:56839400-56841200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr11:56839400-56841200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr11:56839400-56841200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:56839400-56841400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr11:56839400-56841400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:56839400-56841400	Enhancers	HMEC	breast
18	chr11:56839400-56841400	Enhancers	HSMM	muscle
19	chr11:56839400-56841400	Enhancers	NHLF	lung
20	chr11:56839400-56841600	Enhancers	HSMMtube	muscle
21	chr11:56839600-56840000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:56839600-56840000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
23	chr11:56839600-56840200	Enhancers	Colon Smooth Muscle	Colon
24	chr11:56839600-56840200	Enhancers	Duodenum Smooth Muscle	Duodenum
25	chr11:56839600-56840200	Flanking Active TSS	A549	lung
26	chr11:56839600-56840200	Flanking Active TSS	NHDF-Ad	bronchial
27	chr11:56839800-56840200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:56839800-56840400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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