Variant report

Variant	rs7938578
Chromosome Location	chr11:56852591-56852592
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10501362	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11826402	0.80[EUR][1000 genomes]
rs12421316	0.81[AMR][1000 genomes]
rs17649150	0.98[ASN][1000 genomes]
rs61886714	0.81[AMR][1000 genomes]
rs61886716	0.81[AMR][1000 genomes]
rs61886737	0.80[ASN][1000 genomes]
rs61886739	0.90[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs638326	0.87[ASN][1000 genomes]
rs72914002	0.98[ASN][1000 genomes]
rs7938560	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56850000-56855400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:56850400-56855000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:56850600-56855200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:56851400-56852600	Weak transcription	A549	lung
5	chr11:56852200-56852800	Enhancers	Spleen	Spleen

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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