Variant report

Variant	rs638326
Chromosome Location	chr11:56848433-56848434
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10501362	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12421295	0.85[EUR][1000 genomes]
rs12421737	0.84[EUR][1000 genomes]
rs17649150	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61886739	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61886744	0.84[EUR][1000 genomes]
rs7110024	0.84[EUR][1000 genomes]
rs72914002	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs752969	0.84[EUR][1000 genomes]
rs7938578	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832162	chr11:56716658-56901528	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
2	nsv915640	chr11:56814841-57139786	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:56840200-56851600	Weak transcription	Spleen	Spleen
2	chr11:56847200-56850600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:56848000-56848600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:56848200-56849600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:56848400-56849600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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