Variant report

Variant	rs61891309
Chromosome Location	chr11:66848309-66848310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:66846010..66851395-chr11:67007542..67013094,6	MCF-7	breast:
2	chr11:66847685..66849938-chr11:67006237..67008154,2	K562	blood:
3	chr11:66751363..66756232-chr11:66844314..66849671,8	MCF-7	breast:
4	chr11:66847489..66850600-chr11:67083579..67086123,3	MCF-7	breast:
5	chr11:66847793..66850553-chr11:66883657..66886437,2	MCF-7	breast:
6	chr11:66762983..66764493-chr11:66846837..66848390,2	MCF-7	breast:
7	chr11:66847116..66849049-chr11:66877078..66878803,2	MCF-7	breast:
8	chr11:66843398..66845458-chr11:66847926..66850776,2	MCF-7	breast:
9	chr11:66848296..66849888-chr11:67077982..67080752,2	MCF-7	breast:
10	chr11:66748815..66755953-chr11:66843606..66849844,15	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000172830	Chromatin interaction
ENSG00000173120	Chromatin interaction
ENSG00000252709	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28589383	0.81[ASN][1000 genomes]
rs7941655	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66825200-66849200	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:66825400-66849400	Weak transcription	Ovary	ovary
3	chr11:66839400-66849400	Weak transcription	Lung	lung
4	chr11:66839400-66849400	Weak transcription	Right Atrium	heart
5	chr11:66839400-66849400	Weak transcription	Right Ventricle	heart
6	chr11:66844000-66849400	Weak transcription	Pancreas	Pancrea
7	chr11:66846000-66849200	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:66846000-66849200	Weak transcription	Gastric	stomach
9	chr11:66846000-66849400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr11:66846200-66849000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:66846200-66849200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr11:66846200-66849200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr11:66846200-66849400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:66846200-66849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr11:66846400-66849200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:66846400-66849200	Weak transcription	Colonic Mucosa	Colon
17	chr11:66846400-66849200	Weak transcription	K562	blood
18	chr11:66846400-66849400	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr11:66846400-66849400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:66846400-66849400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:66846600-66849000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr11:66846600-66849200	Weak transcription	Fetal Intestine Large	intestine
23	chr11:66846600-66849200	Weak transcription	Osteobl	bone
24	chr11:66846800-66849000	Enhancers	Hela-S3	cervix
25	chr11:66846800-66849000	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr11:66846800-66849200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr11:66846800-66849200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr11:66846800-66849200	Weak transcription	NHEK	skin
29	chr11:66846800-66849400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:66847000-66849000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr11:66847000-66849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:66847000-66849000	Weak transcription	Stomach Mucosa	stomach
33	chr11:66847000-66849200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr11:66847000-66849200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:66847000-66849200	Weak transcription	Fetal Intestine Small	intestine
36	chr11:66847000-66849400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:66847200-66849000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:66847200-66849000	Weak transcription	Placenta	Placenta
39	chr11:66847200-66849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:66847200-66849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr11:66847200-66849200	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr11:66847200-66849200	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr11:66847200-66849200	Weak transcription	A549	lung
44	chr11:66847200-66849400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr11:66847800-66849000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:66847800-66849000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr11:66847800-66849200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr11:66847800-66849400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:66848000-66849000	Weak transcription	Esophagus	oesophagus
50	chr11:66848000-66849000	Weak transcription	HMEC	breast

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