Variant report

Variant	rs7941655
Chromosome Location	chr11:66863010-66863011
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10732253	0.89[JPT][hapmap]
rs11227699	0.85[CEU][hapmap];0.90[JPT][hapmap]
rs28589383	0.93[ASN][1000 genomes]
rs3741189	0.89[JPT][hapmap]
rs3825022	0.89[JPT][hapmap]
rs4457752	0.89[JPT][hapmap]
rs61891309	0.81[ASN][1000 genomes]
rs645387	0.89[JPT][hapmap]
rs682509	0.89[JPT][hapmap]
rs7937611	0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv532287	chr11:66784014-67023899	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv365	chr11:66852591-66879246	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv975118	chr11:66862674-66874347	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:66850800-66866000	Weak transcription	Right Atrium	heart
2	chr11:66861200-66866200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr11:66862400-66863200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr11:66862600-66863200	Enhancers	Gastric	stomach
5	chr11:66862800-66863200	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:66863000-66863200	Bivalent/Poised TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:66863000-66866000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:66863000-66867400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:66863000-66870600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr11:66863000-66871200	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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