Variant report
| Variant | rs61892412 |
|---|---|
| Chromosome Location | chr5:83146516-83146517 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:71)
| rs_ID | r2[population] |
|---|---|
| rs11819760 | 0.85[EUR][1000 genomes] |
| rs11819790 | 0.85[EUR][1000 genomes] |
| rs11820139 | 0.90[EUR][1000 genomes] |
| rs11820227 | 0.88[EUR][1000 genomes] |
| rs1592579 | 1.00[AFR][1000 genomes] |
| rs1592580 | 1.00[AFR][1000 genomes] |
| rs1592592 | 1.00[AFR][1000 genomes] |
| rs2080534 | 1.00[AFR][1000 genomes] |
| rs35203335 | 0.88[EUR][1000 genomes] |
| rs55672857 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61892437 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61892534 | 1.00[AFR][1000 genomes] |
| rs61892763 | 1.00[AFR][1000 genomes] |
| rs61892765 | 1.00[AFR][1000 genomes] |
| rs61892777 | 1.00[AFR][1000 genomes] |
| rs61892780 | 1.00[AFR][1000 genomes] |
| rs61892781 | 1.00[AFR][1000 genomes] |
| rs61892785 | 1.00[AFR][1000 genomes] |
| rs61892792 | 1.00[AFR][1000 genomes] |
| rs61892810 | 1.00[AFR][1000 genomes] |
| rs61892821 | 1.00[AFR][1000 genomes] |
| rs61893276 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs61894451 | 1.00[AFR][1000 genomes] |
| rs61894459 | 1.00[AFR][1000 genomes] |
| rs61894486 | 1.00[AFR][1000 genomes] |
| rs61894489 | 1.00[AFR][1000 genomes] |
| rs61894679 | 0.81[EUR][1000 genomes] |
| rs61894699 | 0.85[EUR][1000 genomes] |
| rs61894707 | 0.85[EUR][1000 genomes] |
| rs61894708 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs61894758 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs61896360 | 1.00[AFR][1000 genomes] |
| rs61896363 | 1.00[AFR][1000 genomes] |
| rs61917273 | 0.83[EUR][1000 genomes] |
| rs61917341 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes] |
| rs61917587 | 1.00[AFR][1000 genomes] |
| rs61917609 | 1.00[AFR][1000 genomes] |
| rs61917632 | 1.00[AFR][1000 genomes] |
| rs61917633 | 1.00[AFR][1000 genomes] |
| rs61917635 | 1.00[AFR][1000 genomes] |
| rs61917639 | 1.00[AFR][1000 genomes] |
| rs61917643 | 1.00[AFR][1000 genomes] |
| rs61917645 | 1.00[AFR][1000 genomes] |
| rs61918061 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61918115 | 1.00[AMR][1000 genomes] |
| rs61918121 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61918650 | 0.88[EUR][1000 genomes] |
| rs61918652 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs61919083 | 1.00[AFR][1000 genomes] |
| rs61919085 | 1.00[AFR][1000 genomes] |
| rs61919086 | 1.00[AFR][1000 genomes] |
| rs61919087 | 1.00[AFR][1000 genomes] |
| rs61919088 | 1.00[AFR][1000 genomes] |
| rs61920064 | 0.88[EUR][1000 genomes] |
| rs61920069 | 0.88[EUR][1000 genomes] |
| rs7294028 | 1.00[AFR][1000 genomes] |
| rs7294095 | 1.00[AFR][1000 genomes] |
| rs7940562 | 0.81[EUR][1000 genomes] |
| rs8186125 | 0.81[EUR][1000 genomes] |
| rs8188847 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs8188924 | 0.83[EUR][1000 genomes] |
| rs8188937 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs8188947 | 1.00[AFR][1000 genomes] |
| rs8189085 | 1.00[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs8189110 | 1.00[AFR][1000 genomes];0.83[EUR][1000 genomes] |
| rs8189155 | 1.00[AFR][1000 genomes] |
| rs8189278 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8189318 | 1.00[AFR][1000 genomes] |
| rs8189323 | 1.00[AFR][1000 genomes] |
| rs8189370 | 1.00[AFR][1000 genomes] |
| rs8189388 | 1.00[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:83140200-83153000 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
