Variant report

Variant	rs61894707
Chromosome Location	chr9:19734364-19734365
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs11819760	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11819790	0.90[EUR][1000 genomes]
rs11820139	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11820227	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1582372	1.00[AMR][1000 genomes]
rs1819874	1.00[AMR][1000 genomes]
rs1894997	1.00[AMR][1000 genomes]
rs35203335	0.93[EUR][1000 genomes]
rs55790605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55944727	1.00[AMR][1000 genomes]
rs56021301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs56189331	1.00[AMR][1000 genomes]
rs56310757	0.80[AMR][1000 genomes]
rs56321624	1.00[AMR][1000 genomes]
rs61892412	0.85[EUR][1000 genomes]
rs61892437	0.95[EUR][1000 genomes]
rs61892778	1.00[AMR][1000 genomes]
rs61892783	1.00[AMR][1000 genomes]
rs61892789	1.00[AMR][1000 genomes]
rs61892813	1.00[AMR][1000 genomes]
rs61892822	1.00[AMR][1000 genomes]
rs61892836	1.00[AMR][1000 genomes]
rs61893276	0.88[EUR][1000 genomes]
rs61894414	0.80[AMR][1000 genomes]
rs61894420	0.80[AMR][1000 genomes]
rs61894452	0.80[AMR][1000 genomes]
rs61894679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61894699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61894708	1.00[EUR][1000 genomes]
rs61894758	0.95[EUR][1000 genomes]
rs61917273	0.92[EUR][1000 genomes]
rs61917341	0.80[EUR][1000 genomes]
rs61917342	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61917569	0.80[AMR][1000 genomes]
rs61917570	0.80[AMR][1000 genomes]
rs61917580	0.80[AMR][1000 genomes]
rs61917581	0.80[AMR][1000 genomes]
rs61917583	0.80[AMR][1000 genomes]
rs61917585	0.80[AMR][1000 genomes]
rs61917586	0.80[AMR][1000 genomes]
rs61918061	0.83[EUR][1000 genomes]
rs61918123	0.82[AFR][1000 genomes]
rs61918650	0.92[EUR][1000 genomes]
rs61918652	0.92[EUR][1000 genomes]
rs61920064	0.92[EUR][1000 genomes]
rs61920069	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7294124	0.80[AMR][1000 genomes]
rs7940562	0.85[EUR][1000 genomes]
rs8186125	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8186540	0.80[AMR][1000 genomes]
rs8188847	1.00[EUR][1000 genomes]
rs8188862	0.80[EUR][1000 genomes]
rs8188924	0.92[EUR][1000 genomes]
rs8188937	1.00[EUR][1000 genomes]
rs8189074	0.80[AMR][1000 genomes]
rs8189079	0.80[AMR][1000 genomes]
rs8189085	0.97[EUR][1000 genomes]
rs8189110	0.92[EUR][1000 genomes]
rs8189144	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028435	chr9:19548004-20533898	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:19727200-19743600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:19733800-19740600	Weak transcription	Brain Hippocampus Middle	brain
3	chr9:19733800-19741000	Weak transcription	Brain Anterior Caudate	brain
4	chr9:19734000-19740800	Weak transcription	Brain Cingulate Gyrus	brain

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